RetrogeneDB ID: | retro_tsyr_2102 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_90926:5408..6537(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTA2 | ||
Ensembl ID: | ENSTSYG00000008155 | ||
Aliases: | None | ||
Description: | actin, alpha 2, smooth muscle, aorta [Source:HGNC Symbol;Acc:130] |
Percent Identity: | 79.37 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 1 |
Parental | MCEEEDSTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS-YVGDEAQSKRGILTL |
MCEEE...AL..D.GSGLCKAGFAG.DAP..VFPS.VG.P..QG..V.MGQK.S..VGDE.Q.K.GILTL | |
Retrocopy | MCEEE-TFALMSDSGSGLCKAGFAGEDAPQSVFPSTVGHPCYQGMVVRMGQKES>NVGDEVQNK*GILTL |
Parental | KYPIEHGIITNWDDMEKIWHHSLYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQ |
KYPIEH..ITNWDDMEKIWH...YN.L...PEEHPTLLTEAPLNPK.NREKMTQIMFETFNV.AMYV.IQ | |
Retrocopy | KYPIEHSFITNWDDMEKIWHQFFYNKLHITPEEHPTLLTEAPLNPKTNREKMTQIMFETFNVTAMYVVIQ |
Parental | AVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAERE |
.VL.LYASG.TT.I.LDS.D..T.N.PIYEGYALPHAIMRLD.AGRDLT.YLMKILTER.YSFVTTAE.E | |
Retrocopy | GVLPLYASGSTTDIILDSRDSLTYNIPIYEGYALPHAIMRLDMAGRDLTYYLMKILTERDYSFVTTAE*E |
Parental | IVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHET |
IV.DIKEKLCYVALDFEN.M.TAASSS.LE.SYEL..G.VITI.NERF.CPETLFQPSFI.MESAGIH.. | |
Retrocopy | IV*DIKEKLCYVALDFEN*MVTAASSSFLERSYELSYG*VITIVNERFCCPETLFQPSFIRMESAGIHKA |
Parental | TYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA |
T.NSIMKCDIDI.KDL.ANNVLSG..TMYPG.ADRMQKEITALAPSTMKIKII.PPE.KYSV.I..SILA | |
Retrocopy | THNSIMKCDIDIHKDLHANNVLSGDNTMYPGVADRMQKEITALAPSTMKIKIISPPEQKYSV*IRYSILA |
Parental | SLSTFQQMWISKQEYDEAGPSIVHRKCF |
.L.TFQ.MWI.K..YDEAGPSIVHRKCF | |
Retrocopy | FLFTFQEMWINKPKYDEAGPSIVHRKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000759 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000006719 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008526 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010843 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000015509 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000012233 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008193 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000002459 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005778 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000017616 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000000406 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000008155 | 5 retrocopies | |
Vicugna pacos | ENSVPAG00000010621 | 3 retrocopies |