RetrogeneDB ID: | retro_dnov_345 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_3860:420040..420591(+) | ||
Located in intron of: | ENSDNOG00000019824 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EPCAM | ||
Ensembl ID: | ENSDNOG00000011799 | ||
Aliases: | None | ||
Description: | epithelial cell adhesion molecule [Source:HGNC Symbol;Acc:11529] |
Percent Identity: | 73.8 % |
Parental protein coverage: | 64.89 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | LFKAR-QCNGTATCWCVNTAG-VRRTDKNTEITCSERVRTYWIIIELKHKTREKPYDVESLRYALETAIT |
LFKAR...N....C.C.NTA..VRRTDKNTEI.CSERVRTYWI...LKH..REKP.D..S...A.E.A.T | |
Retrocopy | LFKAR>STNCITMCCCENTAR<VRRTDKNTEIKCSERVRTYWIFMKLKHRIREKPEDAGSFQTAHEKAVT |
Parental | TRYQLDPKYITNILYENDV-ITIDLVQNSSQKTQNDVDIADVAYYFEKDVKGESLFHSNNMDLKVNGEQL |
...QLD.KY.TNIL.EN.V.ITIDLVQNSSQKTQNDVDIA..AYYFEKDVK..SLFHSN..DL.VNGEQ. | |
Retrocopy | MHLQLDLKYVTNILCENYVIITIDLVQNSSQKTQNDVDIANMAYYFEKDVKSKSLFHSNCVDLRVNGEQP |
Parental | DLDPGQTLIYYVDEKSPEFS-MQGLQAGIIAVIVVVTIAIIAGIVVL |
.LDPGQTLIYYV.E.SPEFS.MQGL.AGIIAVIVVVTIAIIAG..VL | |
Retrocopy | HLDPGQTLIYYVNEQSPEFS<MQGLKAGIIAVIVVVTIAIIAGTFVL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 280 .03 RPM |
SRP012922_cerebellum | 0 .00 RPM | 7 .70 RPM |
SRP012922_heart | 0 .00 RPM | 0 .93 RPM |
SRP012922_kidney | 0 .00 RPM | 64 .62 RPM |
SRP012922_liver | 0 .00 RPM | 9 .60 RPM |
SRP012922_lung | 0 .00 RPM | 49 .02 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 0 .00 RPM |
SRP012922_spleen | 0 .00 RPM | 1 .26 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006474 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000013834 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000000624 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000011799 | 1 retrocopy |
retro_dnov_345 ,
|
Erinaceus europaeus | ENSEEUG00000009462 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000015074 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000000151 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012390 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000001077 | 1 retrocopy | |
Mus musculus | ENSMUSG00000045394 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000004301 | 1 retrocopy | |
Pelodiscus sinensis | ENSPSIG00000015680 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011902 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000015667 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000008429 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000008631 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000004235 | 2 retrocopies |