Parental gene:

EPCAM, ENSBTAG00000006474

Aliases:EPCAM, TACSTD1
Description:epithelial cell adhesion molecule precursor [Source:RefSeq peptide;Acc:NP_001030367]
Organism:Cow (Bos taurus)
Coordinates:11:29626086..29636759(+)


>ENSBTAG00000006474
ATGGCGCCCCCCCAGGTCCTCGCTTTCGGGCTCCTGGTCGCCGCGGCGACGGCGGCGGTGGCCGCAGCCCAGGAAGGATG
TGTGTGTGAAAACTACAAACTGACCACAAACTGCTCTGTGAACGCACTCGGTCAGTGCCAGTGTACTTCAGTTGGTACAC
AGCATTCCGTCATTTGCACAAAATTGGCTACTAAATGCTTGGTGATGAAGGCAGAAATTAGTCACTCAAAGTCCGGGAGA
AGAAGGAAACCAGAGGGCGCCATCCAGAATAATGACGGGCTCTATGACCCCGAGTGTGATGACAAGGGGCTCTTCAAAGC
CAAGCAGTGCAACGGCACCTCCACGTGCTGGTGTGTGAACACTGCTGGGGTCAGAAGAACCGATAAGGACAGTGAAATCT
CCTGCTCTGAGCCAGTGAGGACCTACTGGATCATCATTGAACTAAAACACAAAACAAGGGAAAAACCTTATGATCTTCAA
AGTTTGCAGTCTGCACTCAAGGACGTAATCACAAATCGTTATCAACTGGATCCAAAATATATCACAAATATTCTGTATGA
GAACGATGTTATCACTATTGATCTGGTACAAAATTCTTCTCAGAAAACTCAGAATGATGTGGATATTGCTGATGTGGCTT
ATTATTTTGAAAAAGATGTTAAAGATGAATCCTTGTTCCATTCCAAAAGGATGGACCTGAGAGTAAATGGGGAACTACTG
GATCTGGATCCTGGTCGAACTTCAATTTACTATGTTGATGAAAAACCACCTGAATTTTCAATGCAGGGTCTACAAGCTGG
TATTATTGCCGTCATTGTGGTTGTGGTAGTAGCAATTATTGCTGGAATCATTGTGCTGGTTGTTTCCAGAAAGAAAAGCA
TGACAAAGTATGAGAAAGCTGAGATAAAGGAGATGGGTGAGATGCATAGGGAACTCAATGCATAA

Library Parental gene expression (RPM)
ERP005899_liver 25 .38 RPM
ERP005899_muscle 689 .00 RPM
SRP017611_brain 4 .43 RPM
SRP017611_kidney 159 .44 RPM
SRP017611_liver 7 .40 RPM
SRP030211_testis 97 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000013834 ortholog_one2one 1 retrogene
retro_chof_258,
Callithrix jacchus ENSCJAG00000000624 ortholog_one2one 1 retrogene
retro_cjac_3006,
Dasypus novemcinctus ENSDNOG00000011799 ortholog_one2one 1 retrogene
retro_dnov_345,
Erinaceus europaeus ENSEEUG00000009462 ortholog_one2one 1 retrogene
retro_eeur_151,
Macropus eugenii ENSMEUG00000015074 ortholog_one2one 2 retrogenes
retro_meug_1984, retro_meug_474,
Microcebus murinus ENSMICG00000000151 ortholog_one2one 1 retrogene
retro_mmur_739,
Macaca mulatta ENSMMUG00000012390 ortholog_one2one 1 retrogene
retro_mmul_34,
Monodelphis domestica ENSMODG00000001077 ortholog_one2one 1 retrogene
retro_mdom_104,
Mus musculus ENSMUSG00000045394 ortholog_one2one 1 retrogene
retro_mmus_185,
Ochotona princeps ENSOPRG00000004301 ortholog_one2one 1 retrogene
retro_opri_1225,
Pelodiscus sinensis ENSPSIG00000015680 ortholog_one2one 1 retrogene
retro_psin_22,
Pan troglodytes ENSPTRG00000011902 ortholog_one2one 1 retrogene
retro_ptro_92,
Rattus norvegicus ENSRNOG00000015667 ortholog_one2one 1 retrogene
retro_rnor_252,
Sus scrofa ENSSSCG00000008429 ortholog_one2one 1 retrogene
retro_sscr_69,
Ictidomys tridecemlineatus ENSSTOG00000008631 ortholog_one2one 1 retrogene
retro_itri_106,
Tursiops truncatus ENSTTRG00000004235 ortholog_one2one 2 retrogenes
retro_ttru_21, retro_ttru_394,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_66 50.16 95.86
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Download FASTA sequences of all ENSBTAG00000006474 retrocopies