RetrogeneDB ID: | retro_rnor_252 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 4:163127460..163128414(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000007740 | |
Aliases: | Tacstd2, Prp1 | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Epcam | ||
Ensembl ID: | ENSRNOG00000015667 | ||
Aliases: | Epcam, Egp314, Tacstd1 | ||
Description: | Epithelial cell adhesion molecule [Source:UniProtKB/Swiss-Prot;Acc:O55159] |
Percent Identity: | 51.15 % |
Parental protein coverage: | 95.87 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LLLAVVTATLAAAQKDCVCNNYKLTSRCYENENGECQCTSYGTQNTVICSKLASKCLVMKAEMTHSKSGR |
LLL....A....AQ..C.C...K.T........G.CQC...G.Q..V.CS.L.SKCL..KA.M...KS.R | |
Retrocopy | LLLLAMVAGFCTAQINCTCPTNKMTVCNSNGPGGVCQCRAIGSQVLVDCSTLTSKCLLLKARMSARKSSR |
Parental | RM--KPEGAIQNNDGLYDPECDEQGLFKAKQCNGTATCWCVNTAGVRRTDK-DTEITCSERVRTYWIIIE |
R.....E.AI..NDGLYDPECD..G.FKA.QCN.T..CWCVN..GVRRTDK.D....C.E.VRT..I.IE | |
Retrocopy | RLVNPSEHAILDNDGLYDPECDDKGRFKARQCNQTSVCWCVNSVGVRRTDKGDQSLRCDEVVRTHHILIE |
Parental | LKHKERAQPYNFESLHTALQDTFASRYMLNPKFIKSIMYENNVITIDLMQNSSQKTQDDVDIADVAYYFE |
L.H.......N...L...L...F..RY.L.P.F.....YE...I.I.L.QN.SQK...DVDIAD.AYYFE | |
Retrocopy | LRHRPTDRAFNHSDLDSELRRLFKERYKLHPSFLAAVHYEEPTIQIELQQNASQKGLRDVDIADAAYYFE |
Parental | KDVKGESLFHSSKSMDLRVNGELLDLDPGQTLIYYVDEKAPEFSMQGLTAGIIAVIVVVVLAVIAGIVVL |
.D.KGESLF......D..V.GE.L......TLIYY.DEK.P.FSM..LT.G.IAVI.VV..A..AG.VVL | |
Retrocopy | RDIKGESLFVGRRGLDVQVRGEPLHVE--RTLIYYLDEKPPQFSMKRLTTGLIAVIAVVAVALVAGVVVL |
Parental | VISTRKRSAKYEKAEIKEMGEIHRE |
V...R..S.KY.K.E.KE.GE...E | |
Retrocopy | VVTNRRKSGKYKKVELKELGEMRSE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .07 RPM | 0 .86 RPM |
SRP017611_kidney | 5 .86 RPM | 433 .21 RPM |
SRP017611_liver | 0 .00 RPM | 12 .71 RPM |
Species | RetrogeneDB ID |
---|---|
Mus musculus | retro_mmus_185 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006474 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000013834 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000000624 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000011799 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000009462 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000015074 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000000151 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012390 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000001077 | 1 retrocopy | |
Mus musculus | ENSMUSG00000045394 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000004301 | 1 retrocopy | |
Pelodiscus sinensis | ENSPSIG00000015680 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011902 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000015667 | 1 retrocopy |
retro_rnor_252 ,
|
Sus scrofa | ENSSSCG00000008429 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000008631 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000004235 | 2 retrocopies |