Parental gene:

EPCAM, ENSCJAG00000000624

Aliases:None
Description:epithelial cell adhesion molecule [Source:HGNC Symbol;Acc:11529]
Organism:Marmoset (Callithrix jacchus)
Coordinates:14:60429703..60440930(-)


>ENSCJAG00000000624
GAATGTCACTGCGAAAACTACAAGCTGGCCATCAACTGCGTTATGAATAGCAACGGTCAATGCCAGTGTACTTCAGTTGG
TTCACAAAATACCGTCATTTGCTCAAAGTTGGCTTCTAAATGTTTGGTAATGAAGGCGGAAATTACTAACTCAAAACTTG
GGAGAAGAGCAAAACCTGAAGGGGCCCTCCAGAACAATGATGGGCTTTATGACCCCGACTGTGACGAGAGCGGGCTCTTT
AAGGCCAAGCAGTGCAACGGCACCTCCACGTGCTGGTGTGTGAACACTGCTGGGGTCAGAAGAACAGACAAGGACACTGA
AATAACCTGCTCCGAGCGAGTGAGAACCTTCTGGATCATCATTGAACTAAAACACAAAGCAAGAGAAAAACCTTACGATG
TTCAAAGTTTGCGGGATGCACTTCAGGAGGCAATCACAACGCGTTATCACCTGGATGGAAAATTTATCACAAATGTTGTG
TATGAGAATAATGTTATTACTATTGATCTGGTTCAAAATTCTTCTCAAAAAACTCAGAATGATGTGGACATAGCTGATGT
GGCTTACTATTTTGAAAAAGATGTTAAAGGTGAATCCTTGTTTCATCCTTCTAAGAAAATGGACCTGAGAGTAAATGGGG
AACAACTGGATCTGGATCCTGGTCAAACTTTAATTTATTATGTTGATGAAAAAGCACCTGAATTCTCAATGCAGGGTCTA
AAAGCTGGTGTTATTGCTGTTATTGTGGTTGTAGTGATAGCAATTGTTGCTGGAATTGTTGTGCTGGTTGTTTCCAGAAA
GAAGAGAATGGCAAAGTATCAGAAGGCTGAGATAAAGGAGATGGGTGAGATGAATAGAGAACTCAATGCATAA

Library Parental gene expression (RPM)
SRP051959_colon 523 .14 RPM
SRP051959_heart 0 .02 RPM
SRP051959_kidney 53 .65 RPM
SRP051959_liver 2 .27 RPM
SRP051959_lung 21 .94 RPM
SRP051959_lymph_node 0 .57 RPM
SRP051959_skeletal_muscle 0 .02 RPM
SRP051959_spleen 0 .27 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000006474 ortholog_one2one 1 retrogene
retro_btau_66,
Choloepus hoffmanni ENSCHOG00000013834 ortholog_one2one 1 retrogene
retro_chof_258,
Dasypus novemcinctus ENSDNOG00000011799 ortholog_one2one 1 retrogene
retro_dnov_345,
Erinaceus europaeus ENSEEUG00000009462 ortholog_one2one 1 retrogene
retro_eeur_151,
Macropus eugenii ENSMEUG00000015074 ortholog_one2one 2 retrogenes
retro_meug_1984, retro_meug_474,
Microcebus murinus ENSMICG00000000151 ortholog_one2one 1 retrogene
retro_mmur_739,
Macaca mulatta ENSMMUG00000012390 ortholog_one2one 1 retrogene
retro_mmul_34,
Monodelphis domestica ENSMODG00000001077 ortholog_one2one 1 retrogene
retro_mdom_104,
Mus musculus ENSMUSG00000045394 ortholog_one2one 1 retrogene
retro_mmus_185,
Ochotona princeps ENSOPRG00000004301 ortholog_one2one 1 retrogene
retro_opri_1225,
Pelodiscus sinensis ENSPSIG00000015680 ortholog_one2one 1 retrogene
retro_psin_22,
Pan troglodytes ENSPTRG00000011902 ortholog_one2one 1 retrogene
retro_ptro_92,
Rattus norvegicus ENSRNOG00000015667 ortholog_one2one 1 retrogene
retro_rnor_252,
Sus scrofa ENSSSCG00000008429 ortholog_one2one 1 retrogene
retro_sscr_69,
Ictidomys tridecemlineatus ENSSTOG00000008631 ortholog_one2one 1 retrogene
retro_itri_106,
Tursiops truncatus ENSTTRG00000004235 ortholog_one2one 2 retrogenes
retro_ttru_21, retro_ttru_394,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3006 50.87 98.62
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Download FASTA sequences of all ENSCJAG00000000624 retrocopies