RetrogeneDB ID: | retro_dord_306 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_10897:23723..24112(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ube2r2 | ||
Ensembl ID: | ENSDORG00000007589 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2R 2 [Source:MGI Symbol;Acc:MGI:1914865] |
Percent Identity: | 71.11 % |
Parental protein coverage: | 54.62 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | PNIYENGD-VCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFRKWR |
PNIYENGD...ISILHPP..DP..GELPSERW.P.QN.RTI..SVIS..NEP.TFSP.NVD..V.FRKW. | |
Retrocopy | PNIYENGD<LYISILHPPAEDPYCGELPSERWSPPQNMRTI--SVISMFNEPKTFSPVNVDTPVIFRKWG |
Parental | DSKGKDKEYAEIIRKQVSATKAEAEKDGVKVPTTLAEYCIKTKVPSNDN----SSDLLYDDLYDD |
DSK.KDKE.AEI.RKQVSATKAE...D.VKVPTTL.EY.IK.KV.SN.N....SSDLL.D.LY.D | |
Retrocopy | DSKEKDKECAEIVRKQVSATKAE--EDEVKVPTTLVEY*IKPKVSSNANYIFLSSDLLEDELYND |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000031810 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000007589 | 1 retrocopy |
retro_dord_306 ,
|
Myotis lucifugus | ENSMLUG00000006793 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000023588 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000029045 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000010727 | 1 retrocopy |