RetrogeneDB ID: | retro_ocun_1719 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018812:247564..247982(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2R2 | ||
Ensembl ID: | ENSOCUG00000023588 | ||
Aliases: | None | ||
Description: | Ubiquitin-conjugating enzyme E2 R2 [Source:UniProtKB/Swiss-Prot;Acc:Q29503] |
Percent Identity: | 60.56 % |
Parental protein coverage: | 56. % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | ELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPP-NTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHP |
.LK.LQEEP.EGF.I.L.DE....N.E...F.PP...L.EG.Y.KAHI.FP..YPY...TFRFLT..WHP | |
Retrocopy | QLKYLQEEPMEGF*IILIDEFVPCNLEITTF*PP<HSLREGCY*KAHITFPNNYPYL*LTFRFLTNIWHP |
Parental | NIYENGDVCISILHPPVDDPQSGELPSERW-NPTQNVRTILLSVISLLNEPNTFSPANVDASVMFRKWRD |
NI.ENG..CI..LHPPVDD.QS.EL.SERW.....NVRT.LL..I.L.N.PNT.SPA...A.V.FRKW.D | |
Retrocopy | NISENG*RCIATLHPPVDDTQSKELFSERW<DAIPNVRTTLLNAIILHNWPNTSSPADIVALVVFRKWKD |
Parental | SK |
.K | |
Retrocopy | IK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 32 .56 RPM |
SRP017611_kidney | 0 .00 RPM | 36 .18 RPM |
SRP017611_liver | 0 .00 RPM | 34 .45 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000031810 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000007589 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000011574 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000006793 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000000248 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000023588 | 3 retrocopies |
retro_ocun_131, retro_ocun_1719 , retro_ocun_1793,
|
Otolemur garnettii | ENSOGAG00000029045 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000010727 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005734 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013265 | 7 retrocopies | |
Tursiops truncatus | ENSTTRG00000010587 | 1 retrocopy |