RetrogeneDB ID: | retro_ocun_131 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 17:76221614..76222331(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000022563 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2R2 | ||
Ensembl ID: | ENSOCUG00000023588 | ||
Aliases: | None | ||
Description: | Ubiquitin-conjugating enzyme E2 R2 [Source:UniProtKB/Swiss-Prot;Acc:Q29503] |
Percent Identity: | 75.21 % |
Parental protein coverage: | 95.2 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAQQQMTSSQKALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPY |
MA.....SSQKAL.LELK.LQEEPVEGFR.TLVDE.DLYNWEVAIF.PPNT.YEGGYFKA..KFP..YPY | |
Retrocopy | MARPLVPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFRPPNTYYEGGYFKARLKFPLNYPY |
Parental | SPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPA |
SPP.FRFLTKMWHPNIYE.GDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPA | |
Retrocopy | SPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPA |
Parental | NVDASVMFRKWRDSKGKDKEYAEIIRKQVSATKAEAEKDGVKVPTTLAEYCIKTKVPSNDNSSDLLYDDL |
NVDASVM.RKW..SKG.D.EY..IIRKQV..TK..AE.DGVKVPTTLAEYC...K....D...DL.YDD. | |
Retrocopy | NVDASVMYRKWKESKGRDREYTDIIRKQVLGTKVDAERDGVKVPTTLAEYCVRSKASPPDEGADLFYDDY |
Parental | YDDDIDDEDEEEEDADCYDDDDSGNEES |
Y.D............D...D.DSG.EES | |
Retrocopy | YEDADAEAEGDSRFGDEDEDSDSGAEES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 61 .26 RPM | 32 .56 RPM |
SRP017611_kidney | 97 .71 RPM | 36 .18 RPM |
SRP017611_liver | 48 .33 RPM | 34 .45 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000031810 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000007589 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000011574 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000006793 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000000248 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000023588 | 3 retrocopies |
retro_ocun_131 , retro_ocun_1719, retro_ocun_1793,
|
Otolemur garnettii | ENSOGAG00000029045 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000010727 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005734 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013265 | 7 retrocopies | |
Tursiops truncatus | ENSTTRG00000010587 | 1 retrocopy |