RetrogeneDB ID: | retro_drer_6 | ||
Retrocopy location | Organism: | Zebrafish (Danio rerio) | |
| Coordinates: | 1:24590114..24591267(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSDARG00000094763 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | NPY2R (1 of 3) | ||
| Ensembl ID: | ENSDARG00000057718 | ||
| Aliases: | None | ||
| Description: | neuropeptide Y receptor Y2 [Source:HGNC Symbol;Acc:7957] |
Retrocopy-Parental alignment summary:
>retro_drer_6
ACTGAATACAAAAATGGATGTAAGAACCCAAATAAACACATCTGAAGATGGAACCCTGAGCCAGCTAAATCAGTCCACAA
ACTGTTGTGCACCAGACACTGCTGAAGTTGATGCAGCCTTACTGGATGGTCTGGAAGACAGTACAAAACTGGTGGGTGTT
CAAGTGATCTTGATTTTGGCTTACAGCACCATCATTTTTTTTGGCATGACCGGGAACTCCTTGGTCATATATGTCGTATA
CAAGTTTCGCAATTTACACACGGTGACTAACTATTTCATTGTCAACTTGGCTGTAGCAGACTTGCTGGTAAACACATTGT
GTTTACCTTTTACTTTGATGTACACACTCTATGGAGAGTGGAAATTTGGACAGGTGATGTGTTACCTATTGCCGTACGCA
CAAGGCTTAGCAGTCCACGTTTCAACCATCACACTTAACGTTATAGCACTGGACAGATACCGTAGCATCGTCTACCACAT
GGAAACCAAGATGTCTAAAGACATGTGCGTAGTTGTCATCGCCATCACTTGGGTGGCAAGCGCGATCCTCGCTAGCCCTC
TTGCTATTTTCCGTGAATATGTGACCTTTGACCTTTCACCTGAGCAGACGATTCAAGGTTGCGCAGAAAAGTGGCCTGGA
AGTAGCACAGATGGAACCATCTACAGCATCGCCATGTTTTTTCTACAATATGGCCTGCCGTTGTCCATCATTTCATTTGC
ATACACTCGGATTTGGAACAAGCTAAGAAATCATGTCAGCCCCGGCGGTGGCCGCAGCGACCGCCATCAACGAAGACAGA
AAACAACAAAAATGCTTGTAGCTGTAGTGGTGGTCTTCACCGTTAGCTGGCTGCCATTTCACGCCTTCCAGCTTGCTGTG
GACATCGACAGCAGTGTATTAGAAATAAGAGACTTCAAATTGCTCTATACAGCTTTCCATATTGTTGCCATGTGCTCCAC
TTTTGCAAATCCTATCCTCTATGGTTGGATGAATAGGAACTACAGAGGATCTTTTGTTGCTGTGTTCAAGTGTGGAAGGA
TAAATAATGGAATGAGAAGGGTTAGCAGCAGTGAGGCAGTAAGGGAAAAATGTACACGTAATTTGGAAAACACAATCAGT
ATTGCTCTTACACAAGCAAACACACTTGTGTGA
ORF - retro_drer_6 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 73.39 % |
| Parental protein coverage: | 87.4 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | LGDSTKLLGVQVVLILAYSTIILLGVVGNSLVIYVVYKFKTLRTVTNFFIANLAVADLLVNTLCLPFTLA |
| L.DSTKL.GVQV.LILAYSTII..G..GNSLVIYVVYKF..L.TVTN.FI.NLAVADLLVNTLCLPFTL. | |
| Retrocopy | LEDSTKLVGVQVILILAYSTIIFFGMTGNSLVIYVVYKFRNLHTVTNYFIVNLAVADLLVNTLCLPFTLM |
| Parental | YTLLREWKFGQVLCFTLPYAQGLAVHVSTITLNVIALDRHRCIVYHLDTRMSKDTCFLVIAITWVVSAVL |
| YTL..EWKFGQV.C..LPYAQGLAVHVSTITLNVIALDR.R.IVYH..T.MSKD.C..VIAITWV.SA.L | |
| Retrocopy | YTLYGEWKFGQVMCYLLPYAQGLAVHVSTITLNVIALDRYRSIVYHMETKMSKDMCVVVIAITWVASAIL |
| Parental | ASPLAIFREYGIVDLSPDNSIEVCGEKWPDSSTDSTLYSISTLLLQYVLPLAIISFAYIRIWSKLRNHVS |
| ASPLAIFREY...DLSP...I..C.EKWP.SSTD.T.YSI....LQY.LPL.IISFAY.RIW.KLRNHVS | |
| Retrocopy | ASPLAIFREYVTFDLSPEQTIQGCAEKWPGSSTDGTIYSIAMFFLQYGLPLSIISFAYTRIWNKLRNHVS |
| Parental | P-VGRNDRHHRRRKTTKMLVTMVVVFAVSWLPFHAFQLAIDIDHSVLDMKDFRLLYTVFHIVAMCSTFAN |
| P..GR.DRH.RR.KTTKMLV..VVVF.VSWLPFHAFQLA.DID.SVL...DF.LLYT.FHIVAMCSTFAN | |
| Retrocopy | PGGGRSDRHQRRQKTTKMLVAVVVVFTVSWLPFHAFQLAVDIDSSVLEIRDFKLLYTAFHIVAMCSTFAN |
| Parental | PLLYGWMNRNYRSAFVAVFRCKERLDSLHTEGQPAATVRSKPKKALE |
| P.LYGWMNRNYR..FVAVF.C..R.............VR.K....LE | |
| Retrocopy | PILYGWMNRNYRGSFVAVFKC-GRINNGMRRVSSSEAVREKCTRNLE |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Danio rerio was not studied using RNA-Seq expression data.
Danio rerio was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_drer_6 retrocopy.
Danio rerio was not studied using FANTOM5 data.
retro_drer_6 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_drer_6 has 0 orthologous retrocopies within teleost group .Parental genes homology:
Parental genes homology involve 3 parental genes, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Danio rerio | ENSDARG00000057718 | 1 retrocopy |
retro_drer_6 ,
|
| Oreochromis niloticus | ENSONIG00000014098 | 1 retrocopy | |
| Xiphophorus maculatus | ENSXMAG00000008242 | 1 retrocopy |