RetrogeneDB ID: | retro_ecab_298 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 14:62251600..62252432(+) | ||
Located in intron of: | ENSECAG00000009796 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000023806 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 58.6 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 4 |
Parental | MRRQRNMFHARVQDKTPEKELNETQRDNLPDKEFKQKGIRMLIDLGRRMDKHSENVNKELENIKKS-QSE |
MRRQ.NMF..R.QDK..EKEL..T....LPDKE.K....RML.DLGRR.D..SEN.NKE.ENIKK..QSE | |
Retrocopy | MRRQSNMFQIR*QDKSSEKELYDTEINHLPDKECKLIVRRMLTDLGRRIDDYSENINKEVENIKKE>QSE |
Parental | MKSTILKMK-NSLEGLNSRVDDTEEWIKKLDEKLEEISQVNQVKEKTILKNDSKIKELWDNIKHANIRII |
MK.TIL.MK.NSLEG.NS.VDDT.E.I.KLD..L.E..Q..Q.KEK.I.KN......LWDNIK..NI.II | |
Retrocopy | MKNTILEMK<NSLEGINSTVDDTQERISKLDKRLKEVTQAQQIKEKRINKNGDSLRDLWDNIKCTNIHII |
Parental | SVPGGEERHKGEENLFEEIIDENFPNLRKETDIQVQEEQRAPNKSSPKRPTPIHIIIKMSKIKDKERILK |
.V...EER.KGEENLFEEII...FPN.RKETD.................P.......K....K..E.ILK | |
Retrocopy | DVQQREERGKGEENLFEEIIADKFPNQRKETD-RYRKHREEQTR*TQRCPHQDTL*LKCQELK-TEKILK |
Parental | AARERPEVTYKGKPIRLSADFSAE-TLQATREWHDIFKVLKGK-NLQPRIFYPSRSSFRMEGEIKRFPDK |
AARER.EVTYKG..IRLSADFS.E.TLQA.....D..K..K.K.NLQPRI.Y..R.SFRMEGEI..F.DK | |
Retrocopy | AARERQEVTYKGNLIRLSADFSQE<TLQARSGMIDL-KC*KEK<NLQPRILYLTRLSFRMEGEIRSFADK |
Parental | QNVKE |
Q...E | |
Retrocopy | QKLEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 0 .12 RPM |
SRP021940_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP021940_embryo | 0 .00 RPM | 0 .28 RPM |
SRP021940_placental_villous | 0 .00 RPM | 0 .00 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 0 .08 RPM |
SRP021940_testis | 0 .06 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000010030 | 21 retrocopies |
retro_ecab_1021, retro_ecab_1023, retro_ecab_1035, retro_ecab_1071, retro_ecab_1089, retro_ecab_136, retro_ecab_182, retro_ecab_201, retro_ecab_281, retro_ecab_306, retro_ecab_486, retro_ecab_521, retro_ecab_537, retro_ecab_582, retro_ecab_590, retro_ecab_658, retro_ecab_670, retro_ecab_722, retro_ecab_786, retro_ecab_974, retro_ecab_996,
|
Equus caballus | ENSECAG00000016527 | 5 retrocopies | |
Equus caballus | ENSECAG00000020332 | 9 retrocopies | |
Equus caballus | ENSECAG00000022034 | 4 retrocopies | |
Equus caballus | ENSECAG00000023806 | 15 retrocopies |