RetrogeneDB ID: | retro_ecab_583 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 21:43140287..43140970(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNF167 | ||
Ensembl ID: | ENSECAG00000021567 | ||
Aliases: | None | ||
Description: | ring finger protein 167 [Source:HGNC Symbol;Acc:24544] |
Percent Identity: | 71.62 % |
Parental protein coverage: | 65.33 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | PAAFQLPVVV-ATVLWGAAPIRGLIRATSDHNASMDFADLPALFGAALSQEGLQGFLVEAHPANACSPIA |
PAAF.LPVV.....LWGAAP..G...A..DH.A..DFADLP.LF.AAL.QEG.QGFLVEAHPANA.SPIA | |
Retrocopy | PAAFPLPVVA<TPGLWGAAPT*GRFGAVLDHSACVDFADLPTLFEAALRQEGRQGFLVEAHPANASSPIA |
Parental | PPPPAPVNGSVFIALLRRFDCNFDLKVLNAQKAGYGAAVVHNVNSNELLNMVWNSEEIQQQIWIPSVFIG |
PP.PA.VNGSVF..L.RRFD.NF.LKVL.AQK..Y.AAV.HNVNS.ELLNM.W..EEIQQQI.I.SVFI. | |
Retrocopy | PPLPASVNGSVFVGLFRRFDSNFALKVL*AQKPEYDAAVAHNVNSRELLNMGWTQEEIQQQICISSVFIR |
Parental | ERSSEYLRALFVYEKGARVLLVPDNSFPLGYYLIPFTGIVGLLVLAMGAVMIVRCIQHRKRLQRNRLTKE |
ERS...LRA..VY.KGA.VLLVPDNSF.LG..LI.FTGIVGLL.LAMGA.....CI...K.LQ.N.LTKE | |
Retrocopy | ERSTKRLRAILVYQKGAQVLLVPDNSFLLGCCLILFTGIVGLLILAMGAMALAHCIWSQKQLQQNQLTKE |
Parental | QLKQIPTHDYQKGDQYDVC |
QLKQ.PTHDYQKGDQYD.C | |
Retrocopy | QLKQLPTHDYQKGDQYDIC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 41 .26 RPM |
SRP021940_cerebellum | 0 .00 RPM | 69 .23 RPM |
SRP021940_embryo | 0 .00 RPM | 52 .09 RPM |
SRP021940_placental_villous | 0 .00 RPM | 80 .06 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 50 .70 RPM |
SRP021940_testis | 1 .98 RPM | 106 .15 RPM |
Species | RetrogeneDB ID |
---|---|
Canis familiaris | retro_cfam_84 |
Sus scrofa | retro_sscr_518 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006392 | 1 retrocopy | |
Bos taurus | ENSBTAG00000004913 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000015830 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000011757 | 2 retrocopies | |
Equus caballus | ENSECAG00000021567 | 1 retrocopy |
retro_ecab_583 ,
|
Felis catus | ENSFCAG00000011173 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000010940 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000003781 | 1 retrocopy | |
Sorex araneus | ENSSARG00000011216 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000017906 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000001298 | 1 retrocopy |