Parental gene:

RNF167, ENSSSCG00000017906

Aliases:None
Description:ring finger protein 167 [Source:HGNC Symbol;Acc:24544]
Organism:Pig (Sus scrofa)
Coordinates:12:54030937..54039462(-)


>ENSSSCG00000017906
ATGCACCCTGCGGCCTTCCCGCTTCCTGTGGTTGTGGCCACTGTGCTGTGGGGAGTGGCCCCCAGCCAGGGGCTTATTCG
AGCGATCTCGGACCACAATGCCAGCATGGACTTTGCAGACCTCCCAGCTCTCTTTGGGGCTGCCTTGAGCCAGGAGGGAC
TTCAGGGCTTCCTTGTGGAGGCTCACCCAGACAATGCCTGCAGCCCCATTGCCCCACCACCCCCAGCCCCGGTCAATGGG
TCAGTCTTTATTGCACTGCTTCGAAGATTCGACTGCAACTTTGACCTCAAGGTCCTGAATGCTCAGAAGGCTGGGTATGG
TGCTGCTGTGGTTCACAACGTAAACTCCAATGAACTTCTGAACATGGTGTGGAATAGTGAGGAAATCCAGCAGCAGATCT
GGATCCCGTCTGTGTTCATTGGGGAGAGGAGCTCCCAGTACCTGCGTGCCCTCTTTGTCTACGAGAAGGGGGCTCGGGTG
CTCCTGGTCCCAGACAATAGCTTCCCCTTGGGCTATTACCTCATCCCTTTCACAGGGATTGTGGGACTGCTGGTTTTGGC
CATGGGAGCAGTGATGATAGTTCGTTGTATCCAGCACCGGAAACGGCTCCAGCGGAATCGACTGACCAAAGAGCAACTAA
AACAGATTCCTACACATGACTATCAAAAGGGGGACCAGTATGATGTGTGTGCCATCTGCCTGGATGAATATGAGGATGGT
GACAGGCTGAGGGTACTCCCCTGTGCTCACGCTTACCACAGCCGCTGTGTGGACCCCTGGCTCACTCAGACCCGGAAGAC
CTGCCCCATCTGCAAGCAGCCTGTTCATCGGGGTCCTGGGGACGAGGAGCAGGAAGAAGAAACCCAGGAGCAAGAGGGCG
ATGAGGAAGGGGAGCCAAGGGACCACCCTGCCTCTGAGCGGACCCCACTTCTGGGCTCCAGCCCCACGCTTCCCACCTCC
TTTGGCTCCCTAGCCCCTGCCCCCCTTGTCTTTCCTGGGTCTTCAACAGACCCCTCACCCTCTATCTCCTCTTCAGCTGC
CGTCTTGGTCTAA

Library Parental gene expression (RPM)
SRP014902_placenta 126 .76 RPM
SRP014902_testis 82 .18 RPM
SRP018856_adipose 96 .87 RPM
SRP018288_kidney 76 .74 RPM
SRP018288_lung 85 .43 RPM
SRP018288_liver 65 .72 RPM
SRP018288_heart 28 .34 RPM
SRP035408_liver 59 .71 RPM
SRP035408_brain 40 .65 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006392 ortholog_one2one 1 retrogene
retro_amel_43,
Bos taurus ENSBTAG00000004913 ortholog_one2one 1 retrogene
retro_btau_217,
Canis familiaris ENSCAFG00000015830 possible_ortholog 2 retrogenes
retro_cfam_1053, retro_cfam_84,
Dipodomys ordii ENSDORG00000011757 ortholog_one2one 2 retrogenes
retro_dord_277, retro_dord_432,
Equus caballus ENSECAG00000021567 ortholog_one2one 1 retrogene
retro_ecab_583,
Felis catus ENSFCAG00000011173 ortholog_one2one 1 retrogene
retro_fcat_99,
Mustela putorius furo ENSMPUG00000010940 ortholog_one2one 1 retrogene
retro_mputfur_95,
Pteropus vampyrus ENSPVAG00000003781 ortholog_one2one 1 retrogene
retro_pvam_1206,
Sorex araneus ENSSARG00000011216 ortholog_one2one 1 retrogene
retro_sara_517,
Sus scrofa ENSSSCG00000012551 other_paralog 1 retrogene
retro_sscr_597,
Sus scrofa ENSSSCG00000014013 other_paralog 3 retrogenes
retro_sscr_150, retro_sscr_253, retro_sscr_254,
Tursiops truncatus ENSTTRG00000001298 ortholog_one2one 1 retrogene
retro_ttru_1062,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_518 79.06 79.14
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Download FASTA sequences of all ENSSSCG00000017906 retrocopies