RetrogeneDB ID: retro_mputfur_95

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896975.1:1568171..1569221(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000019939
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: Rnf167
• Ensembl ID: ENSMPUG00000010940
• Aliases: None
• Description: ring finger protein 167 [Source:MGI Symbol;Acc:MGI:1917760]

Sequence

>retro_mputfur_95
ATGCACCCCGCGGCCTTCCTGCTTTGCACGCTTGTAGCCACTTTGCTGTGGGGAGTGGTCCCCATCCAGGGGCTCGTTCG
AGCGATTTCTGACCACAATAACAGCATGGACTTTGCAGACCTTCCAGCTCTTTTTGGGTCTGCCTTGAGCCACGAGGGAC
TTCAGGGGTTCCTTGTGGAGGCTCAGCCGGCCAACGCCTGCAGCCCAGTTGCTTCGCCACCCCCAGCTGCGGTCAACGGG
TCAGTCTTTATTGCACTTCTTCGGAGATTCGACTGCAACTTTGACCTCAAGGTCCTAAATGTTCAGAAGGCTGGGTATGG
TGCAGCTGTAGTACACAATGTAAATTCCAACGAACTTCTGAATATGGTGTGGAACAGTGAGGAAATCCAGCAGCAGATCT
GGATCCCGTCTGTGTTTATTGGGGAAAGGAGTTCCAAGTACCTGCGTGCTCTCTTCGTCTACGAGAAGGGAGCTCAAGTG
CTCCTGGTCCCAGACAGTAACTACCTCCTGGGCTTCTGTCTCATCCCTTTCACAGGGTTTATGGGACTGCTGATTTTGGC
CATGGGAGCAGGGCTGATAGTTCGTTTTATCCATCACCAGAAACAGCTCCAGCAGAATCGGCTGACCAAAGAGCAACTGA
AGCAGATTCCTATACATGACTATCAGAAAGGAGACCACTACGACGTCTGTGCCATCTGCCTGGACGAATATGAGGATGGA
GACAAGCTGAGGGTACTTCCCTGTGCTCATGCTTATCACAGCCGCTGTGTGGACCCCTGGCTCACTCAGACCCGGAAGAC
CTGCCCCATCTGCAAGCAGCCTGTTCACAGGGGTCCTGGAGAAGGGGAGGAGGAGGAAGCAACTCAGGGGCAAGGGGGTG
ATGAAGAAGGGGAGCCAAGGGACCACCCTGCCACAGAACGGACCCCCCTTCTGGGCTCCAGCCTCACACTTCCCACATCC
TTTGGCTCCCTAGCCCCAGCCCCCCTTGTTTTTCCTGGGTCTTCAATAGCTCCATCACCATCTCCATCCTCTTCTTCCTC
TTCTGCTGTG

Alignment

ORF - retro_mputfur_95 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80. %
• Parental protein coverage: 99.43 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MRPAAFPLPVVVAAVLWGAAPARGLIRATSDHNASMDFADLPALFGASLSQEGLQGFLVEAQPANACSLI
          M.PAAF.L...VA..LWG..P..GL.RA.SDHN.SMDFADLPALFG..LS.EGLQGFLVEAQPANACS..
Retrocopy MHPAAFLLCTLVATLLWGVVPIQGLVRAISDHNNSMDFADLPALFGSALSHEGLQGFLVEAQPANACSPV

Parental  APPPPAPVNGSVFIALLRRFDCNFDLKVLNAQKAGYGAAVVHNVGSNELLNMVWNSEEIQQQIWIPSVFI
          A.PPPA.VNGSVFIALLRRFDCNFDLKVLN.QKAGYGAAVVHNV.SNELLNMVWNSEEIQQQIWIPSVFI
Retrocopy ASPPPAAVNGSVFIALLRRFDCNFDLKVLNVQKAGYGAAVVHNVNSNELLNMVWNSEEIQQQIWIPSVFI

Parental  GERSSEYLRALFVYEKGARVLLVPDNSFPLGYYLIPFTGIVGLLVLAMGAVMVVRCIQHRKRLQRNRLTK
          GERSS.YLRALFVYEKGA.VLLVPD....LG..LIPFTG..GLL.LAMGA...VR.I.H.K.LQ.NRLTK
Retrocopy GERSSKYLRALFVYEKGAQVLLVPDSNYLLGFCLIPFTGFMGLLILAMGAGLIVRFIHHQKQLQQNRLTK

Parental  EQLRQIPTHDYRKVPGDQYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPVHRG
          EQL.QIP.HDY.K..GD.YDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPVHRG
Retrocopy EQLKQIPIHDYQK--GDHYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPVHRG

Parental  PGD-EDEDETQGQEGDEEGEPRDHPASERTPLLGPSPTPPASFGSLAPTSPVLPGSSTDPPPAPPSSSAA
          PG..E.E..TQGQ.GDEEGEPRDHPA.ERTPLLG.S.T.P.SFGSLAP...V.PGSS..P.P.P.SSS..
Retrocopy PGEGEEEEATQGQGGDEEGEPRDHPATERTPLLGSSLTLPTSFGSLAPAPLVFPGSSIAPSPSPSSSSSS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_95 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_95 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000006392	1 retrocopy	retro_amel_43,
Bos taurus	ENSBTAG00000004913	1 retrocopy	retro_btau_217,
Canis familiaris	ENSCAFG00000015830	2 retrocopies	retro_cfam_1053, retro_cfam_84,
Dipodomys ordii	ENSDORG00000011757	2 retrocopies	retro_dord_277, retro_dord_432,
Equus caballus	ENSECAG00000021567	1 retrocopy	retro_ecab_583,
Felis catus	ENSFCAG00000011173	1 retrocopy	retro_fcat_99,
Mustela putorius furo	ENSMPUG00000003695	1 retrocopy	retro_mputfur_340,
Mustela putorius furo	ENSMPUG00000010940	1 retrocopy	retro_mputfur_95 ,
Pteropus vampyrus	ENSPVAG00000003781	1 retrocopy	retro_pvam_1206,
Sorex araneus	ENSSARG00000011216	1 retrocopy	retro_sara_517,
Sus scrofa	ENSSSCG00000017906	1 retrocopy	retro_sscr_518,
Tursiops truncatus	ENSTTRG00000001298	1 retrocopy	retro_ttru_1062,