RetrogeneDB ID:

retro_pvam_1206

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:scaffold_4141:108257..108836(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RNF167
Ensembl ID:ENSPVAG00000003781
Aliases:None
Description:ring finger protein 167 [Source:HGNC Symbol;Acc:24544]


Retrocopy-Parental alignment summary:






>retro_pvam_1206
AGGAGCTCCGAGTACCTGCGTGCCCTCTTCCTCTACCACAAGGGGGCTCAGGTGCTCCTGCTCCCAGACAACAGCTTCAT
CTTGATCTATTACTGCCTCATCCCTTTCACAGGGATTGTGGGACTACTAATCTTGACTGGAGCGGTGATGTTACTTCGTT
GTATCCAGCACCAGAAACAGCTCCAGCGAAATCGACTGACCCAACAGCAACTGAAACTGATTCCTACACATGACTATCAG
AAGGGAGATCAGTATGACGTCTGTGTCATCTGCCTGGACGAATATGAAGATGGGGACAAGCTAAGGGTACTTCCCTGTAC
TCATGCCTATCACAGCCGCTGTGTAGACCCTTGGCTCACTCGGACCCGGAAGACCTGTCCCATCTGCAAAGAGCCCGTTC
AGCAGGAGGAAGAAACTCGGGGGCAAGAAAGAGAGCCAAGGGGCCACGCTGCCTCAGAACGGACCCCTCTTCTGGGCGCC
GGCCCCAGGCTTCCCACATCCTTTGGCTCCCTAGCCCCCGCTCCGCTTGTTTTTCCTTCAACGGATCCCTCGCCCTCTCT
ATCCTCCTCTTCTTCAGCT

ORF - retro_pvam_1206 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 65.98 %
Parental protein coverage: 55.3 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalRSSEYLRALFVYEKGARVLLVPDNSFPLGYY-LIPFTGIVGLLVLAMGAVMIVRCIQHRKRLQRNRLTKE
RSSEYLRALF.Y.KGA.VLL.PDNSF.L.YY.LIPFTGIVGLL.L..GAVM..RCIQH.K.LQRNRLT..
RetrocopyRSSEYLRALFLYHKGAQVLLLPDNSFILIYYCLIPFTGIVGLLILT-GAVMLLRCIQHQKQLQRNRLTQQ
ParentalQLKQIPTHDYQKGDQYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPVHRGPGD
QLK.IPTHDYQKGDQYDVC.ICLDEYEDGDKLRVLPC.HAYHSRCVDPWLT.TRKTCPICK.PV......
RetrocopyQLKLIPTHDYQKGDQYDVCVICLDEYEDGDKLRVLPCTHAYHSRCVDPWLTRTRKTCPICKEPVQQEEET
ParentalEEQEETPGQDGDEEEEPRDHPASEQTPLLGSSPRGPTSFGSLAPAPLIFPGSSA
..QE..P......E..P............GS....P..F.S..P.P.....SSA
RetrocopyRGQEREPRGHAASERTPLLGAGPRLPTSFGSLAPAPLVFPSTDPSPSLSSSSSA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_1206 was not experimentally validated.

Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 11 parental genes, and 13 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000063921 retrocopy
Bos taurus ENSBTAG000000049131 retrocopy
Canis familiaris ENSCAFG000000158302 retrocopies
Dipodomys ordii ENSDORG000000117572 retrocopies
Equus caballus ENSECAG000000215671 retrocopy
Felis catus ENSFCAG000000111731 retrocopy
Mustela putorius furoENSMPUG000000109401 retrocopy
Pteropus vampyrus ENSPVAG00000003781 1 retrocopy
retro_pvam_1206 ,
Sorex araneus ENSSARG000000112161 retrocopy
Sus scrofa ENSSSCG000000179061 retrocopy
Tursiops truncatus ENSTTRG000000012981 retrocopy



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