RetrogeneDB ID: | retro_eeur_362 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_269774:6173..6614(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSEEUG00000006901 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MEAF6 | ||
Ensembl ID: | ENSEEUG00000013971 | ||
Aliases: | None | ||
Description: | MYST/Esa1-associated factor 6 [Source:HGNC Symbol;Acc:25674] |
Percent Identity: | 92.62 % |
Parental protein coverage: | 85.96 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | ETLANLERQIYAFEGSYLEDTQMYGNIIRGWDRYLTNQKNSNSKNDRRNRKFKEAERLFSKSSVTSAAAV |
E.LA.LERQ.YAFEGSYLEDTQMYGNIIRGWDRYLTNQKNSNS.NDRRNRKFKEAERLFSKSSVTSAAAV | |
Retrocopy | EALAKLERQVYAFEGSYLEDTQMYGNIIRGWDRYLTNQKNSNSTNDRRNRKFKEAERLFSKSSVTSAAAV |
Parental | SALAGVQDQL-XXXXEPGSGTESDTSPDFHNQENEPSQEDPEDLDGSVQGVKPQKAASSTSSGSHHSSHK |
SALAGVQDQL.....EPGSGTESDTSPDFHNQENE.SQEDPEDLDGSVQGVKPQKAASSTSSGSHHSSHK | |
Retrocopy | SALAGVQDQL>LKKREPGSGTESDTSPDFHNQENEASQEDPEDLDGSVQGVKPQKAASSTSSGSHHSSHK |
Parental | KRKNK-NRH |
KRKNK.NRH | |
Retrocopy | KRKNK<NRH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 2 .09 RPM | 13 .70 RPM |
SRP017611_kidney | 1 .13 RPM | 2 .81 RPM |
SRP017611_liver | 0 .00 RPM | 0 .16 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000001927 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000025988 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000013971 | 3 retrocopies |
retro_eeur_362 , retro_eeur_469, retro_eeur_654,
|
Macropus eugenii | ENSMEUG00000003403 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000017128 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000006773 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000001916 | 1 retrocopy |