RetrogeneDB ID: | retro_meug_1279 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold350176:889..1378(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MEAF6 | ||
Ensembl ID: | ENSMEUG00000003403 | ||
Aliases: | None | ||
Description: | MYST/Esa1-associated factor 6 [Source:HGNC Symbol;Acc:25674] |
Percent Identity: | 95.09 % |
Parental protein coverage: | 81.09 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | TRRELAELVKRKQELAETLANLERQIYAFEGSYLEDTQMYGNIIRGWDRYLTNQKNSNSKNDRRNRKFKE |
.RRELAELVKRKQELAETLA.LERQIYAFEGSY.EDTQM.G.IIRGWDRYLTNQKNSNSKNDRRNRKFKE | |
Retrocopy | SRRELAELVKRKQELAETLAYLERQIYAFEGSYVEDTQMCGKIIRGWDRYLTNQKNSNSKNDRRNRKFKE |
Parental | AERLFSKSSVTSAAAVSALAGVQEQLIEKREPGSGTESDTSPDFHNQENEPSQEDTEDLEGSVQGVKPQK |
AERLFSKS.VTSAAAVSALAGVQEQLIEKREPGSGTESDTSPDFHNQ.NEPSQEDT.DLEGSVQGVKPQK | |
Retrocopy | AERLFSKS*VTSAAAVSALAGVQEQLIEKREPGSGTESDTSPDFHNQDNEPSQEDTGDLEGSVQGVKPQK |
Parental | AASSTSSGSHHSSHKKRKNKNRH |
AASSTSSGSHHSSHKKRKNKNRH | |
Retrocopy | AASSTSSGSHHSSHKKRKNKNRH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000001927 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000025988 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000013971 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000003403 | 3 retrocopies |
retro_meug_1279 , retro_meug_584, retro_meug_727,
|
Myotis lucifugus | ENSMLUG00000017128 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000006773 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000001916 | 1 retrocopy |