RetrogeneDB ID: | retro_eeur_481 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_322303:6307..6904(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSEEUG00000010991 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 59.41 % |
Parental protein coverage: | 79.28 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | CKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKK-DRETMGHRYVEVFKSNNVEMDWVLKHTGP |
C.IQ.GA.G..FI.T.EGR.SGE.FVELES.DE.K.ALKK.DRE..GH...EV.KS....M.WVLKH.GP | |
Retrocopy | CMIQYGAAGVHFIFTGEGRQSGEVFVELESDDEIKFALKK>DRESLGH**TEVCKSHRTKMEWVLKHSGP |
Parental | NSPDTANDGFVRLRGLPFGCSKEE-IVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKK |
.S.DT.NDGF.RL.G.PFGC.KEE.IVQFFSG..IVPNGITLPVD..G..TG.AF.QFASQE.AEKAL.. | |
Retrocopy | DSADTVNDGFIRL*GFPFGCTKEEIIVQFFSGVKIVPNGITLPVDPEGKITGKAFRQFASQELAEKALGM |
Parental | HKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRG-AGFERMR |
..E.....Y......S..EVR....PP.K....Q.PGPYD.P..GR.Y.....G.AG...MR | |
Retrocopy | QGENKAQIY*SV-QGSKEEVRSYSYPPLKFISAQWPGPYD*PDTGRRYIALLNG<AGLDKMR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 88 .79 RPM |
SRP017611_kidney | 0 .00 RPM | 109 .71 RPM |
SRP017611_liver | 0 .00 RPM | 45 .50 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003841 | 4 retrocopies | |
Equus caballus | ENSECAG00000014429 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000010991 | 1 retrocopy |
retro_eeur_481 ,
|
Erinaceus europaeus | ENSEEUG00000013364 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000011303 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000015766 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000016625 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000010843 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000009436 | 3 retrocopies | |
Ochotona princeps | ENSOPRG00000003513 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000006715 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000007670 | 1 retrocopy | |
Sorex araneus | ENSSARG00000003024 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000018204 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000007485 | 2 retrocopies |