RetrogeneDB ID: | retro_pcap_4 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | GeneScaffold_2802:72959..74309(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPCAG00000003333 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSPCAG00000006715 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.77 % |
Parental protein coverage: | 98.82 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ESEDEVNLALKKT-QTIGHR-AEVFKSNNVDMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFF |
ESEDEV.LALKK...T.GHR..EVFKSN.V.MDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFF | |
Retrocopy | ESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFF |
Parental | SGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKL |
SGLEIVPNG.TLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKL | |
Retrocopy | SGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKL |
Parental | MAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLNYCFSGM |
MAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDY.GYNDGYGFGSDRFGRDLNYCFSGM | |
Retrocopy | MAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYGGYNDGYGFGSDRFGRDLNYCFSGM |
Parental | SDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDA |
SDHRYGDGGS.FQSTTGHCVHMRGLPYRATENDIYNFFSPLNP.RVHIEIGPDGRVTGEADVEFATHEDA | |
Retrocopy | SDHRYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDA |
Parental | VAAMSKDKANMQHRYVELFLNSTAGASGGAY-YRYVELFLTSTARASGGAYGSQMMG |
VAAM.K.KANMQHRYVELFLNSTAG.SGGAY...YVELFL.STA.ASGGAYGSQMMG | |
Retrocopy | VAAMAKHKANMQHRYVELFLNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |