Parental gene:

ENSMODG00000009436

Aliases:None
Description:None
Organism:Opossum (Monodelphis domestica)
Coordinates:1:343905392..343917009(+)


>ENSMODG00000009436
ATGATGCTGAGCACCGAAGGCGGAGAAGGCTTCGTGGTGAAGGTCCGGGGCTTGCCCTGGTCCTGCTCGGCCGATGAAGT
CCAACGCTTCTTCTCGGAATGCAAAATTCAAAATGGGGCATCAGGCATTCGTTTCATCTATACCCGGGAAGGCAGACCAA
GTGGAGAAGCATTTGTTGAACTTGAATCAGAAGATGAAGTCAAATTGGCACTGAAAAAAGACAGAGAAACTATGGGACAC
AGATATGTTGAAGTATTCAAGTCAAACAACGTTGAAATGGATTGGGTGTTGAAGCATACTGGTCCAAATAGTCCTGACAC
TGCCAATGATGGCTTTGTGCGCCTTAGAGGACTCCCATTTGGCTGTAGCAAGGAAGAAATTGTTCAGTTTTTTTCAGGGT
TGGAAATCGTGCCAAATGGGATAACATTGCCGGTGGACTTCCAGGGGAGGAGTACGGGGGAGGCCTTCGTGCAGTTTGCT
TCACAGGAAATAGCTGAAAAGGCTCTAAAGAAACACAAGGAAAGAATAGGGCACAGGTACATTGAAATCTTCAAGAGCAG
CCGGGCAGAAGTTCGAACTCATTATGATCCTCCTCGAAAGCTAATGGCTATGCAGCGGCCAGGTCCTTATGACAGGCCTG
GTGCTGGCAGAGGCTATAACAGCATTGGTAGAGGAGCTGGGTTTGAAAGAATGAGACGTGGTGCCTATGGTGGAGGGTAT
GGAGGCTATGATGACTACAATGGATATAATGATGGATATGGCTTTGGGTCTGATAGATTTGGAAGAGACCTCAATTACTG
TTTTTCAGGAATGTCTGATCATAGATATGGAGATGGTGGGTCTACTTTCCAGAGTACAACAGGCCATTGTGTGCACATGA
GAGGATTACCTTACAGAGCTACTGAAAATGATATTTACAATTTTTTCTCACCACTCAACCCTGTTCGAGTACACATTGAA
ATTGGACCTGATGGCAGAGTGACTGGAGAAGCAGATGTTGAATTTGCTACTCATGAAGATGCTGTGGCAGCTATGTCAAA
AGACAAAGCAAATATGCAGCACAGATATGTAGAACTCTTCTTGAATTCTACAGCAGGAGCAAGCGGTGGTGCTTACGAAC
ACAGATATGTAGAACTCTTCTTGAATTCTACAGCAGGAGCAAGCGGTGGTGCTTATGCAAACCAGTCCAGTTACGGTGGT
CCAGCTAGCCAGCAGCTGAGCGGGGGTTATGGAGGAGGATACGGTGGTCAAAGCAGCATGAGTGGATATGACCAAGTTTT
ACAGGAAAACTCCAGTGATTTTCAATCAAACATTGCATAG

Library Parental gene expression (RPM)
SRP007412_brain 1869 .72 RPM
SRP007412_cerebellum 2881 .62 RPM
SRP007412_heart 1119 .36 RPM
SRP007412_kidney 2505 .93 RPM
SRP007412_liver 1900 .67 RPM
SRP007412_testis 1938 .21 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008888 possible_ortholog 2 retrogenes
retro_amel_57, retro_amel_9,
Bos taurus ENSBTAG00000009389 possible_ortholog 1 retrogene
retro_btau_130,
Bos taurus ENSBTAG00000020513 possible_ortholog 1 retrogene
retro_btau_42,
Canis familiaris ENSCAFG00000000336 possible_ortholog 2 retrogenes
retro_cfam_200, retro_cfam_230,
Choloepus hoffmanni ENSCHOG00000003841 ortholog_one2one 4 retrogenes
retro_chof_1051, retro_chof_1235, retro_chof_1491, retro_chof_2650,
Callithrix jacchus ENSCJAG00000009931 possible_ortholog 1 retrogene
retro_cjac_127,
Cavia porcellus ENSCPOG00000001485 possible_ortholog 5 retrogenes
retro_cpor_1065, retro_cpor_1094, retro_cpor_1095, retro_cpor_121, retro_cpor_711,
Dipodomys ordii ENSDORG00000005453 possible_ortholog 1 retrogene
retro_dord_3,
Equus caballus ENSECAG00000014429 possible_ortholog 1 retrogene
retro_ecab_94,
Erinaceus europaeus ENSEEUG00000010991 possible_ortholog 1 retrogene
retro_eeur_481,
Erinaceus europaeus ENSEEUG00000013364 possible_ortholog 2 retrogenes
retro_eeur_478, retro_eeur_649,
Echinops telfairi ENSETEG00000011303 possible_ortholog 1 retrogene
retro_etel_50,
Felis catus ENSFCAG00000001204 possible_ortholog 2 retrogenes
retro_fcat_131, retro_fcat_27,
Homo sapiens ENSG00000169045 possible_ortholog 2 retrogenes
retro_hsap_3322, retro_hsap_4911,
Gorilla gorilla ENSGGOG00000025844 possible_ortholog 2 retrogenes
retro_ggor_1299, retro_ggor_177,
Loxodonta africana ENSLAFG00000015766 possible_ortholog 2 retrogenes
retro_lafr_366, retro_lafr_74,
Myotis lucifugus ENSMLUG00000016625 possible_ortholog 1 retrogene
retro_mluc_124,
Macaca mulatta ENSMMUG00000010843 possible_ortholog 1 retrogene
retro_mmul_2,
Mustela putorius furo ENSMPUG00000000693 possible_ortholog 1 retrogene
retro_mputfur_156,
Mus musculus ENSMUSG00000007850 possible_ortholog 1 retrogene
retro_mmus_142,
Nomascus leucogenys ENSNLEG00000026658 possible_ortholog 3 retrogenes
retro_nleu_1668, retro_nleu_28, retro_nleu_48,
Otolemur garnettii ENSOGAG00000012631 possible_ortholog 2 retrogenes
retro_ogar_208, retro_ogar_498,
Ochotona princeps ENSOPRG00000003513 possible_ortholog 1 retrogene
retro_opri_11,
Procavia capensis ENSPCAG00000006715 possible_ortholog 1 retrogene
retro_pcap_4,
Pongo abelii ENSPPYG00000016121 possible_ortholog 1 retrogene
retro_pabe_110,
Pteropus vampyrus ENSPVAG00000007670 possible_ortholog 1 retrogene
retro_pvam_23,
Rattus norvegicus ENSRNOG00000003399 possible_ortholog 1 retrogene
retro_rnor_340,
Sorex araneus ENSSARG00000003024 possible_ortholog 1 retrogene
retro_sara_29,
Sarcophilus harrisii ENSSHAG00000018204 ortholog_one2one 1 retrogene
retro_shar_674,
Sus scrofa ENSSSCG00000014022 possible_ortholog 1 retrogene
retro_sscr_70,
Ictidomys tridecemlineatus ENSSTOG00000016376 possible_ortholog 2 retrogenes
retro_itri_66, retro_itri_78,
Vicugna pacos ENSVPAG00000007485 possible_ortholog 2 retrogenes
retro_vpac_594, retro_vpac_614,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mdom_333 71.07 62.87
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2. retro_mdom_1301 79.69 58.31
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3. retro_mdom_1302 85.94 58.31
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Download FASTA sequences of all ENSMODG00000009436 retrocopies