RetrogeneDB ID: | retro_etel_1552 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_278073:37895..38346(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMCO1 | ||
Ensembl ID: | ENSETEG00000009382 | ||
Aliases: | None | ||
Description: | transmembrane and coiled-coil domains 1 [Source:HGNC Symbol;Acc:18188] |
Percent Identity: | 86.54 % |
Parental protein coverage: | 89.41 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | RITMFA-DTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETIT-ESAGRQQKKK |
RITMFA.DTLLIVFIS.CTALLAEG.TWVLVYRTD.YKRLKAEVEKQSKKLE.KK......SAGR.QKKK | |
Retrocopy | RITMFA<DTLLIVFISGCTALLAEGMTWVLVYRTDRYKRLKAEVEKQSKKLE-KKQETV>QSAGRHQKKK |
Parental | IERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFT-PLSYIQGLSHRNLL-GD |
IERQEEKLKNNNR.LSMVRM.SM.A.GFCFTALMG.FNSIFDGRVVAKLPFT.PLSYIQGLSHRNLL.GD | |
Retrocopy | IERQEEKLKNNNRALSMVRMESMLATGFCFTALMGRFNSIFDGRVVAKLPFT<PLSYIQGLSHRNLL<GD |
Parental | DTTDCSFIFLYILCTM |
.TTDCSFIFL.ILCTM | |
Retrocopy | STTDCSFIFLCILCTM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000010009 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000013472 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000009382 | 2 retrocopies |
retro_etel_1552 , retro_etel_570,
|
Macropus eugenii | ENSMEUG00000011045 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000001335 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000008441 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000016602 | 1 retrocopy |