RetrogeneDB ID: | retro_meug_997 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold2537:1677..2028(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMCO1 | ||
Ensembl ID: | ENSMEUG00000011045 | ||
Aliases: | None | ||
Description: | transmembrane and coiled-coil domains 1 [Source:HGNC Symbol;Acc:18188] |
Percent Identity: | 68.85 % |
Parental protein coverage: | 63.64 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | ERQEEKLKNNNRDLSMVRMKSMFAIGF-CFTALMGMFNSIF-DGRVVAKLPFTPLSYIQGLSHRNLLGED |
.R.E......N....MVRMKS.FAI.F.CFTAL.GMFNSI..DG.VVAKLPFT.LSY.QGLSH.NLLGED | |
Retrocopy | KRRE*RGRRRN*RITMVRMKSRFAIDF<CFTALRGMFNSIL<DGQVVAKLPFTLLSYVQGLSH*NLLGED |
Parental | YTDCSFIFLYILCTMSIRQNIQKMLGL-APSRAATKQAGGFLGPPTPAGKFS |
YT.CSFIFL..LCTMSIR......L.L.APS.AATKQA.GFL..P.PAGKFS | |
Retrocopy | YTNCSFIFLFVLCTMSIR-TFRRCLTL<APSQAATKQAQGFLDSPIPAGKFS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000010009 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000013472 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000009382 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000011045 | 2 retrocopies |
retro_meug_894, retro_meug_997 ,
|
Monodelphis domestica | ENSMODG00000001335 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000008441 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000011784 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000016602 | 1 retrocopy |