RetrogeneDB ID: | retro_meug_894 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold2219:25644..25975(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMCO1 | ||
Ensembl ID: | ENSMEUG00000011045 | ||
Aliases: | None | ||
Description: | transmembrane and coiled-coil domains 1 [Source:HGNC Symbol;Acc:18188] |
Percent Identity: | 76.79 % |
Parental protein coverage: | 59.36 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | NNNRDLSMVRMKSMFAIGFCF-TALMGMFNSIFDGRVVAKLPFTPLSYIQGLSHRNLLGEDYTDCSFIFL |
NNNRDLSMV.MK.MFAI.FCF.TALMG.FNS.FDGR.VAK.PFTPLSYI..L...NLLGEDYTD..FIFL | |
Retrocopy | NNNRDLSMVQMKCMFAIDFCF>TALMGKFNSTFDGRMVAKFPFTPLSYIEELTQQNLLGEDYTDYTFIFL |
Parental | YILCTMSIRQNIQKMLGLAPSRAATKQAGGFLGPPTPAGKFS |
YILCTMSI..N.QKML.LAP..AATKQAGG.L.P..PAGK.S | |
Retrocopy | YILCTMSIG*NSQKMLDLAPFLAATKQAGG-LCPLNPAGKLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000010009 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000013472 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000009382 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000011045 | 2 retrocopies |
retro_meug_894 , retro_meug_997,
|
Monodelphis domestica | ENSMODG00000001335 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000008441 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000011784 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000016602 | 1 retrocopy |