RetrogeneDB ID: | retro_etel_1923 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_314418:39321..39838(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPP2CB | ||
Ensembl ID: | ENSETEG00000018123 | ||
Aliases: | None | ||
Description: | protein phosphatase 2, catalytic subunit, beta isozyme [Source:HGNC Symbol;Acc:9300] |
Percent Identity: | 73.33 % |
Parental protein coverage: | 57.61 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | IGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYGNA |
IGGKSPDTN..FMGDYVDRGYYSVETVTLL.ALKV..PE......G...S.............L..YGN. | |
Retrocopy | IGGKSPDTND*FMGDYVDRGYYSVETVTLLAALKVCHPELSSFFQG---SMKADRSHKYVVSMLNVYGN- |
Parental | NVWKYFTDLFDYLPLTALVDGQIF-CLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGW |
.V..YFTDLFDYLPLTALVDGQ.F.CL.GG.SPSIDT.DHIRALD.LQEV..EGPMCDLLWS.PDDRGGW | |
Retrocopy | -VGTYFTDLFDYLPLTALVDGQTF<CLCGGPSPSIDTPDHIRALDPLQEVLQEGPMCDLLWSHPDDRGGW |
Parental | GISPRGAGYTFGQDISETFNHANGLTLVSRAH-QLVMEGY |
GISPRG..YTFGQDISETFN.ANGLT.VSRAH.QL.MEGY | |
Retrocopy | GISPRGVDYTFGQDISETFNDANGLTGVSRAH<QLGMEGY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001615 | 1 retrocopy | |
Bos taurus | ENSBTAG00000009245 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000010906 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000007561 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000018123 | 4 retrocopies | |
Felis catus | ENSFCAG00000025139 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000019001 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000002488 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000000102 | 1 retrocopy |