RetrogeneDB ID: | retro_etel_1233 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_232594:8587..9105(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000002167 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPP2CA | ||
Ensembl ID: | ENSETEG00000007561 | ||
Aliases: | None | ||
Description: | protein phosphatase 2, catalytic subunit, alpha isozyme [Source:HGNC Symbol;Acc:9299] |
Percent Identity: | 90.8 % |
Parental protein coverage: | 55.99 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | YGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHE-GPMCDLLWSDPDD |
YGNANVWKYFTDLFDY.PLTALV.GQIFCLHGGLSPSIDT.DHIRALDRLQEVPHE.GPMCDLLWSDPDD | |
Retrocopy | YGNANVWKYFTDLFDYVPLTALVHGQIFCLHGGLSPSIDTPDHIRALDRLQEVPHE<GPMCDLLWSDPDD |
Parental | RGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAI |
RGGWGISPRG.GYT.GQDISETFNHANGLT.VSRAHQLVMEGYN.C.D..VVTIFSA.NYCY..GNQAA. | |
Retrocopy | RGGWGISPRGVGYTLGQDISETFNHANGLTVVSRAHQLVMEGYNLCYDGDVVTIFSASNYCYGYGNQAAL |
Parental | MELDDTLKYSFLQFDPAPRRGEPHVTRRTPDYFL |
MELDDTLKYSFLQFDPAPR.GEPHVTRRTPDYFL | |
Retrocopy | MELDDTLKYSFLQFDPAPR*GEPHVTRRTPDYFL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000002653 | 1 retrocopy | |
Bos taurus | ENSBTAG00000000469 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013011 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000007561 | 2 retrocopies |
retro_etel_1233 , retro_etel_659,
|
Echinops telfairi | ENSETEG00000018123 | 4 retrocopies | |
Felis catus | ENSFCAG00000029685 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000010169 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005447 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000016632 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000016859 | 1 retrocopy |