RetrogeneDB ID: | retro_etel_695 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_146582:455..730(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SEC61B | ||
Ensembl ID: | ENSETEG00000005293 | ||
Aliases: | None | ||
Description: | Sec61 beta subunit [Source:HGNC Symbol;Acc:16993] |
Percent Identity: | 65.98 % |
Parental protein coverage: | 94.79 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | PSGTNVG-SSGR-SPSKAVAARA-AGSTVR-QRKNASCGTRSAGRTT-SAGTGGMWRFYTEDSPGLKVGP |
PSGTN.G.SSGR.SPSK........GSTVR.QR....C.T.S.G.T..SAGT.G.W.FYTEDSPGL.V.P | |
Retrocopy | PSGTNMG>SSGR>SPSKSSGRPGWPGSTVR>QRRK--CRTPSSGHTA>SAGTRGRWCFYTEDSPGLRVDP |
Parental | VPVLVMSLLF-IASVFMLHIWGKYTRS |
VP.LVMSLLF.IA.VFMLHI.G.YT.S | |
Retrocopy | VPLLVMSLLF>IAFVFMLHIRGEYTHS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000002457 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000011279 | 1 retrocopy | |
Equus caballus | ENSECAG00000026930 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000005293 | 4 retrocopies | |
Homo sapiens | ENSG00000106803 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004205 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000000321 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000011121 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000001097 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000010661 | 1 retrocopy | |
Mus musculus | ENSMUSG00000053317 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017055 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004168 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000019441 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000021184 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000006345 | 1 retrocopy |