RetrogeneDB ID: retro_nleu_2844

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397449.1:2038795..2039084(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SEC61B
• Ensembl ID: ENSNLEG00000017055
• Aliases: None
• Description: None

Sequence

>retro_nleu_2844
ATGCCTGATCTGACCCCCAGTGGCACTAACGATGGGATCCTCAGGGCACTCTCCCAGCAAAGCCGTGGCCGCCCGGGCGG
CGGGATCCACTGTCCAGCAGAGGAAAAATGCCAGCTGTGGGACAAGGAACACAGGCCGCACGACCTCGGCAGGCACCGGG
GGGATGTGGCGATTCTACACAGAAGATTCACCTGGGCTCCAAGTTGGCCCTATTCCAGTATTGGTTATGAGTCTTCTGTT
CATCGCTTCTGTATTTATGTTGCACATTTGGGGCAAGTACACTCGTTCG

Alignment

ORF - retro_nleu_2844 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.69 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MPGPTPSGTN-VGSSGRSPSKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVG
          MP..TPSGTN..GSSG.SPSKAVAARAAGSTV.QRKNASCGTR..GRTTSAGTGGMWRFYTEDSPGL.VG
Retrocopy MPDLTPSGTN>MGSSGHSPSKAVAARAAGSTVQQRKNASCGTRNTGRTTSAGTGGMWRFYTEDSPGLQVG

Parental  PVPVLVMSLLFIASVFMLHIWGKYTRS
          P.PVLVMSLLFIASVFMLHIWGKYTRS
Retrocopy PIPVLVMSLLFIASVFMLHIWGKYTRS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_2844 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 12 parental genes, and 23 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000002457	3 retrocopies	retro_btau_1053, retro_btau_360, retro_btau_791,
Equus caballus	ENSECAG00000026930	1 retrocopy	retro_ecab_711,
Echinops telfairi	ENSETEG00000005293	4 retrocopies	retro_etel_1777, retro_etel_1889, retro_etel_483, retro_etel_695,
Gorilla gorilla	ENSGGOG00000004205	1 retrocopy	retro_ggor_708,
Macropus eugenii	ENSMEUG00000000321	1 retrocopy	retro_meug_1921,
Microcebus murinus	ENSMICG00000011121	4 retrocopies	retro_mmur_1037, retro_mmur_1631, retro_mmur_435, retro_mmur_543,
Myotis lucifugus	ENSMLUG00000001097	1 retrocopy	retro_mluc_2170,
Macaca mulatta	ENSMMUG00000010661	1 retrocopy	retro_mmul_86,
Mus musculus	ENSMUSG00000053317	2 retrocopies	retro_mmus_1377, retro_mmus_2679,
Nomascus leucogenys	ENSNLEG00000017055	1 retrocopy	retro_nleu_2844 ,
Otolemur garnettii	ENSOGAG00000004168	3 retrocopies	retro_ogar_1132, retro_ogar_2671, retro_ogar_823,
Pongo abelii	ENSPPYG00000019441	1 retrocopy	retro_pabe_680,