RetrogeneDB ID: | retro_fcat_1429 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D1:8734469..8734883(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TIMM17B | ||
Ensembl ID: | ENSFCAG00000002569 | ||
Aliases: | None | ||
Description: | translocase of inner mitochondrial membrane 17 homolog B (yeast) [Source:HGNC Symbol;Acc:17310] |
Percent Identity: | 59.03 % |
Parental protein coverage: | 80.81 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | FQAIKGFRNAPVGIRHRLRGSVNAVRIRAPQIGGSFAV-WGGLFSTIDCGLVRLRGKEDPWNSITSGA-L |
F...KGF.N..VGI.HRL.GS..A...RAPQ.GGSFAV...GLFS.ID...V...G..DPWNSIT.GA.L | |
Retrocopy | FKQSKGFCNSAVGINHRLQGSLTAFGTRAPQLGGSFAV<FRGLFSMIDGSMVQV-GERDPWNSITRGA<L |
Parental | TGAVLAARSGPLA-MVGSAMMGGILLALIEGVGILLTRYTAQQFRNAPPFLEDPSQL--PPKEGTPAPGY |
.GA.LAAR.GP.A.MV.SA.MGGILLALIEG...LLTR....QF.N.P.F.E.PSQL...P....P...Y | |
Retrocopy | NGAMLAARNGPVA<MVESATMGGILLALIEGAA-LLTRSASAQFPNGPQFAENPSQLTSAPLPLSPFGNY |
Parental | PSYQ |
..YQ | |
Retrocopy | QPYQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 3 .79 RPM |
SRP017611_kidney | 0 .00 RPM | 8 .76 RPM |
SRP017611_liver | 0 .00 RPM | 3 .54 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000012474 | 1 retrocopy | |
Bos taurus | ENSBTAG00000018496 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000008768 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000025897 | 2 retrocopies | |
Felis catus | ENSFCAG00000002569 | 2 retrocopies |
retro_fcat_1429 , retro_fcat_1654,
|
Gorilla gorilla | ENSGGOG00000011427 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000004174 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000005971 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000009148 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000004547 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000013675 | 1 retrocopy | |
Mus musculus | ENSMUSG00000031158 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007902 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000027418 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000007643 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014173 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010396 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000009578 | 1 retrocopy |