RetrogeneDB ID: | retro_ggor_2222 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 5:146936498..146936982(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL2BP | ||
Ensembl ID: | ENSGGOG00000005471 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 60. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MDALEGESFALSFSSASDAEFDAVVGYLEDIIMDDEFQLLQRNFMDKYYLEFEDTEENKLIYTPIFNEYI |
M..LE...F.LSFSS.S...F....GYL..I..D.E..LLQRNF.D.Y..EFED...NKL.Y.P.F.EYI | |
Retrocopy | MNTLEEDNFLLSFSSTSAEQFYSLAGYLYYIMVDNEL*LLQRNFLDIYCQEFEDKLKNKLTYMPTFKEYI |
Parental | SLVEKYIEEQLLQRIPGFNMAA-FTTTLQHHKDEVAGDIFDMLLTFTDFLAFKEMFLDYRAEKEG-RGLD |
.LVEKYI..QLL....GFNMAA...T...H.KDE...DIFD.L.TFT...AFKE.FLDY..EK.G..GLD | |
Retrocopy | YLVEKYIKDQLLGQMLGFNMAA<LMTLQHH-KDEAVDDIFDILFTFTGLIAFKE*FLDYKEEKQG<LGLD |
Parental | LSSGLVVTSLCKSSSLPASQNNLRH |
LSSGL.VTSLCKSSS..ASQ..L.H | |
Retrocopy | LSSGLLVTSLCKSSSMLASQKDLKH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 49 .49 RPM |
SRP007412_cerebellum | 0 .00 RPM | 39 .60 RPM |
SRP007412_heart | 0 .00 RPM | 8 .72 RPM |
SRP007412_kidney | 0 .00 RPM | 29 .73 RPM |
SRP007412_liver | 0 .00 RPM | 15 .69 RPM |
SRP007412_testis | 0 .00 RPM | 117 .38 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3263 |
Pan troglodytes | retro_ptro_2207 |
Pongo abelii | retro_pabe_2704 |
Macaca mulatta | retro_mmul_2055 |