RetrogeneDB ID: | retro_cjac_1928 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 2:75140362..75140630(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000012116 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.43 % |
Parental protein coverage: | 55.56 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LVEKYVEEQLLERIPGFNMAAFTVTLQHHRDEVAGDIFDMLLTFTDF-LAFKEMFLDYRAEKEGRGLDLS |
LV.K..E.QLL.RIPGFN.A.FTVTL.HH.DEV.GDIFDMLLTFTD..LAFKE.FL.Y.AEK....LD.S | |
Retrocopy | LVGKFIE-QLLKRIPGFNTAVFTVTL*HHKDEVSGDIFDMLLTFTDY>LAFKEIFLYYKAEKADQRLDFS |
Parental | SGLVVTSLCKSSSVPASPNNL |
SGLVV..L.KS.S.PAS.NNL | |
Retrocopy | SGLVVALLYKSPSMPASQNNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 5 .59 RPM |
SRP051959_heart | 0 .00 RPM | 8 .37 RPM |
SRP051959_kidney | 0 .00 RPM | 8 .39 RPM |
SRP051959_liver | 0 .00 RPM | 1 .86 RPM |
SRP051959_lung | 0 .00 RPM | 11 .22 RPM |
SRP051959_lymph_node | 0 .00 RPM | 6 .89 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 4 .45 RPM |
SRP051959_spleen | 0 .00 RPM | 5 .86 RPM |