Parental gene:

ENSCJAG00000012116

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:20:11250647..11260356(+)


>ENSCJAG00000012116
ATGGACGCCTTAGAAGAGAGCTTTGCGCTGTCTTTCTCCTCTGCCTCTGATGCAGAATTTGATGCCGTGGTTGGATATTT
AGAGGACATTATCATGGATGACAAGTTCCAGTTACTACAGAGAAATTTCATGGACAAGTACTACCTGGAGTTTGAAGACA
CAGAGGAGAATAAACTCACCTACACTCCTATTTTTAATGAATACATTTCTCTGGTAGAAAAATATGTTGAAGAACAGCTG
CTGGAGCGGATTCCTGGATTCAACATGGCAGCTTTCACCGTAACATTACAGCATCATAGAGATGAAGTGGCTGGTGACAT
ATTCGACATGCTGCTCACCTTTACAGATTTTCTGGCTTTTAAAGAAATGTTTTTGGACTACAGAGCAGAAAAAGAAGGCC
GAGGACTGGATTTAAGCAGTGGCTTAGTGGTGACGTCGTTGTGCAAATCATCATCTGTGCCAGCTTCCCCGAACAATCTG
CGGCACTAG

Library Parental gene expression (RPM)
SRP051959_colon 5 .59 RPM
SRP051959_heart 8 .37 RPM
SRP051959_kidney 8 .39 RPM
SRP051959_liver 1 .86 RPM
SRP051959_lung 11 .22 RPM
SRP051959_lymph_node 6 .89 RPM
SRP051959_skeletal_muscle 4 .45 RPM
SRP051959_spleen 5 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000004844 possible_ortholog 1 retrogene
retro_btau_362,
Canis familiaris ENSCAFG00000008785 possible_ortholog 3 retrogenes
retro_cfam_1026, retro_cfam_1235, retro_cfam_1357,
Choloepus hoffmanni ENSCHOG00000009016 possible_ortholog 16 retrogenes
retro_chof_1180, retro_chof_1220, retro_chof_1287, retro_chof_1526, retro_chof_1655, retro_chof_1677, retro_chof_1858, retro_chof_1904, retro_chof_2024, retro_chof_2189, retro_chof_2247, retro_chof_2646, retro_chof_2658, retro_chof_408, retro_chof_500, retro_chof_977,
Cavia porcellus ENSCPOG00000011406 ortholog_one2many 5 retrogenes
retro_cpor_1501, retro_cpor_203, retro_cpor_249, retro_cpor_299, retro_cpor_571,
Dipodomys ordii ENSDORG00000016342 possible_ortholog 2 retrogenes
retro_dord_227, retro_dord_579,
Equus caballus ENSECAG00000016621 possible_ortholog 3 retrogenes
retro_ecab_307, retro_ecab_344, retro_ecab_754,
Felis catus ENSFCAG00000002937 possible_ortholog 3 retrogenes
retro_fcat_400, retro_fcat_69, retro_fcat_974,
Homo sapiens ENSG00000102931 ortholog_one2many 7 retrogenes
retro_hsap_1189, retro_hsap_1846, retro_hsap_3237, retro_hsap_3263, retro_hsap_3270, retro_hsap_4293, retro_hsap_999,
Gorilla gorilla ENSGGOG00000005471 ortholog_one2many 5 retrogenes
retro_ggor_2159, retro_ggor_2202, retro_ggor_2222, retro_ggor_2868, retro_ggor_927,
Loxodonta africana ENSLAFG00000008633 possible_ortholog 3 retrogenes
retro_lafr_103, retro_lafr_228, retro_lafr_418,
Microcebus murinus ENSMICG00000012467 possible_ortholog 6 retrogenes
retro_mmur_1066, retro_mmur_1385, retro_mmur_1444, retro_mmur_1515, retro_mmur_247, retro_mmur_499,
Myotis lucifugus ENSMLUG00000012680 ortholog_one2many 3 retrogenes
retro_mluc_1338, retro_mluc_1843, retro_mluc_746,
Macaca mulatta ENSMMUG00000020352 ortholog_one2many 7 retrogenes
retro_mmul_1260, retro_mmul_2037, retro_mmul_2055, retro_mmul_2059, retro_mmul_223, retro_mmul_2232, retro_mmul_2458,
Monodelphis domestica ENSMODG00000013511 ortholog_one2many 1 retrogene
retro_mdom_1182,
Mustela putorius furo ENSMPUG00000004306 possible_ortholog 2 retrogenes
retro_mputfur_1046, retro_mputfur_1369,
Nomascus leucogenys ENSNLEG00000002803 ortholog_one2many 7 retrogenes
retro_nleu_1050, retro_nleu_1939, retro_nleu_1946, retro_nleu_2114, retro_nleu_2332, retro_nleu_2428, retro_nleu_955,
Oryctolagus cuniculus ENSOCUG00000000582 ortholog_one2many 1 retrogene
retro_ocun_431,
Otolemur garnettii ENSOGAG00000014535 possible_ortholog 9 retrogenes
retro_ogar_1448, retro_ogar_1476, retro_ogar_1657, retro_ogar_1658, retro_ogar_1919, retro_ogar_2427, retro_ogar_2475, retro_ogar_3184, retro_ogar_3352,
Ochotona princeps ENSOPRG00000006931 ortholog_one2many 2 retrogenes
retro_opri_675, retro_opri_98,
Procavia capensis ENSPCAG00000005664 possible_ortholog 2 retrogenes
retro_pcap_110, retro_pcap_84,
Pongo abelii ENSPPYG00000007384 ortholog_one2many 8 retrogenes
retro_pabe_1318, retro_pabe_1348, retro_pabe_1453, retro_pabe_2684, retro_pabe_2704, retro_pabe_3498, retro_pabe_843, retro_pabe_990,
Pan troglodytes ENSPTRG00000008150 ortholog_one2many 7 retrogenes
retro_ptro_1231, retro_ptro_2189, retro_ptro_2207, retro_ptro_2910, retro_ptro_2948, retro_ptro_752, retro_ptro_816,
Pteropus vampyrus ENSPVAG00000001391 possible_ortholog 2 retrogenes
retro_pvam_507, retro_pvam_788,
Rattus norvegicus ENSRNOG00000016991 ortholog_one2many 1 retrogene
retro_rnor_780,
Sorex araneus ENSSARG00000005442 ortholog_one2many 1 retrogene
retro_sara_190,
Ictidomys tridecemlineatus ENSSTOG00000010254 possible_ortholog 1 retrogene
retro_itri_638,
Tupaia belangeri ENSTBEG00000014441 ortholog_many2many 1 retrogene
retro_tbel_2991,
Tarsius syrichta ENSTSYG00000004923 ortholog_many2many 10 retrogenes
retro_tsyr_1003, retro_tsyr_1066, retro_tsyr_1205, retro_tsyr_1728, retro_tsyr_1755, retro_tsyr_1958, retro_tsyr_2144, retro_tsyr_28, retro_tsyr_298, retro_tsyr_351,
Tursiops truncatus ENSTTRG00000012794 possible_ortholog 3 retrogenes
retro_ttru_1403, retro_ttru_325, retro_ttru_973,
Vicugna pacos ENSVPAG00000005976 possible_ortholog 2 retrogenes
retro_vpac_242, retro_vpac_554,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_625 67.70 97.53
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2. retro_cjac_689 88.81 82.72
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3. retro_cjac_1766 66.41 77.78
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4. retro_cjac_1920 100.00 100.00
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5. retro_cjac_1928 71.43 55.56
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6. retro_cjac_2548 72.87 79.01
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7. retro_cjac_2580 75.46 100.00
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8. retro_cjac_2698 64.46 100.00
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9. retro_cjac_4074 71.96 64.81
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Download FASTA sequences of all ENSCJAG00000012116 retrocopies