RetrogeneDB ID: | retro_ggor_565 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 10:11082254..11082603(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ORMDL1 | ||
Ensembl ID: | ENSGGOG00000015259 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.73 % |
Parental protein coverage: | 76.47 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | VLLSIP-FFSVPVAWTLTNIIHNLGMYVFLHA-VKGTPFETPDQGKARLLTHWEQLDYGVQFTSSRKFFT |
VLLSIP.FF.V..A.TLTNIIHNLGM..F.HA..KGTP.ETPDQGKARL.TH.EQL..GV.FTSSRKFFT | |
Retrocopy | VLLSIP<FFRVLIA*TLTNIIHNLGMNGFFHA<LKGTPLETPDQGKARLPTHCEQLGDGVPFTSSRKFFT |
Parental | ISPIILYFLASFYT-KYDPTHFILNTASLLSVL-IPKMPQLHGVRIFGINK |
.SPIIL.F.ASFY..KY.PTH.I..TASLLS.L..P.M.Q.H.V.IFGINK | |
Retrocopy | VSPIILCFPASFYR<KYAPTHSIVSTASLLSTL>TPQMQQQHSVPIFGINK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 23 .45 RPM |
SRP007412_cerebellum | 0 .00 RPM | 24 .70 RPM |
SRP007412_heart | 0 .00 RPM | 3 .85 RPM |
SRP007412_kidney | 0 .04 RPM | 31 .85 RPM |
SRP007412_liver | 0 .00 RPM | 27 .12 RPM |
SRP007412_testis | 0 .21 RPM | 39 .26 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_645 |
Pan troglodytes | retro_ptro_469 |
Macaca mulatta | retro_mmul_2432 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000005579 | 1 retrocopy | |
Homo sapiens | ENSG00000128699 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015259 | 1 retrocopy |
retro_ggor_565 ,
|
Loxodonta africana | ENSLAFG00000007769 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000014339 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014316 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006625 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000013017 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000012736 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000016044 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012942 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000005240 | 2 retrocopies |