RetrogeneDB ID: retro_mluc_2318

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430200:580444..580871(-)
• Located in intron of: ENSMLUG00000011201

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ORMDL1
• Ensembl ID: ENSMLUG00000014339
• Aliases: None
• Description: None

Sequence

>retro_mluc_2318
ATGAACCCAAATACCCGGGCAATGGACAGCCAGGGATGTGGCTGACACATGCATTGGGCATTGGCTTGCTTCAGATTGTC
TTACTCAGTATTCCCTTCTTCAGTGTTCTGCGGCATGGCCTCAACACATGTTATATGTAAGCTGGGATGTATGTGTTTTT
GCATGCTGTAAAAGGAACACCTTTTGAAACTCCTGGCCAGGGTAAAGCAAGGCTCCTAACTCCTTGGGAACAACTAGACT
ATGGAGTACAGTTTACATCTTCACGCAAGTTTTTCACAATTTCTCCAATAATTCTGTATTTTCTGGCAAGTTGCTATACG
AAATATGCTCTAACTCACTTCATGCTGAACACAGCTTCTCTCCTGAGTGTGCTAGTTCCCAAAGTGCCACAGCTACATGG
TGTTTGGATTTTGGAATTAACAAGTAT

Alignment

ORF - retro_mluc_2318 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.21 %
• Parental protein coverage: 94.12 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  VNPNTRVMNSRG-IWLTYALGVGLLHIVLLSIPFFSV-PVAW-TLTNVIHNLG-MYVFLHAVKGTPFETP
          .NPNTR.M.S.G..WLT.ALG.GLL.IVLLSIPFFSV...AW...T.VI..LG.MYVFLHAVKGTPFETP
Retrocopy MNPNTRAMDSQG<MWLTHALGIGLLQIVLLSIPFFSV<SAAW<ASTHVICKLG<MYVFLHAVKGTPFETP

Parental  DQGRARLLTHWEQLDYGVQFTSSRKFFTISPIILYFLASFYTKYDPTHFMLNTASLLSVLIPKVPQLHGV
          .QG.ARLLT.WEQLDYGVQFTSSRKFFTISPIILYFLAS.YTKY..THFMLNTASLLSVL.PKVPQLHGV
Retrocopy GQGKARLLTPWEQLDYGVQFTSSRKFFTISPIILYFLASCYTKYALTHFMLNTASLLSVLVPKVPQLHGV

Parental  RI-FGINKY
          .I.FGINKY
Retrocopy WI<FGINKY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2318 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 13 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000005579	1 retrocopy	retro_cjac_2962,
Homo sapiens	ENSG00000128699	1 retrocopy	retro_hsap_645,
Gorilla gorilla	ENSGGOG00000015259	1 retrocopy	retro_ggor_565,
Loxodonta africana	ENSLAFG00000007769	1 retrocopy	retro_lafr_411,
Myotis lucifugus	ENSMLUG00000003575	1 retrocopy	retro_mluc_901,
Myotis lucifugus	ENSMLUG00000014339	1 retrocopy	retro_mluc_2318 ,
Macaca mulatta	ENSMMUG00000014316	1 retrocopy	retro_mmul_2432,
Nomascus leucogenys	ENSNLEG00000006625	1 retrocopy	retro_nleu_730,
Pongo abelii	ENSPPYG00000013017	2 retrocopies	retro_pabe_570, retro_pabe_571,
Pan troglodytes	ENSPTRG00000012736	1 retrocopy	retro_ptro_469,
Sus scrofa	ENSSSCG00000016044	1 retrocopy	retro_sscr_247,
Tupaia belangeri	ENSTBEG00000012942	1 retrocopy	retro_tbel_10,
Tursiops truncatus	ENSTTRG00000005240	2 retrocopies	retro_ttru_1846, retro_ttru_770,