RetrogeneDB ID: retro_ggor_732

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 11:82267972..82268274(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RHOC
• Ensembl ID: ENSGGOG00000002741
• Aliases: None
• Description: None

Sequence

>retro_ggor_732
GAGAACAACATAGATGACATTGAAGTGAAAGGAAAGTATATGGGGTTGGCTATATGGGACACAGTTGGGCAGGAAGGTCA
AGATCACCTGAGGACTCTTTCCTACCCAGACACCAGTGTTATATTGAGGTGTTCCTTCGTCAATAGCTTTGGAGTTTAGA
AAACCTCCCAGGACAAAGAACCTTAGAGAGTAAGCGTTTCTGCCCCAATGTGTACAGCATTCTAGTTGGGAACAAGATGC
ATCTTCTGAAGGATGGGCACATAAGACAGGATCTCACCAAGATGAAGCAAGAGTTGGTAAAA

Alignment

ORF - retro_ggor_732 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 59.8 %
• Parental protein coverage: 52.33 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  ENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD-SLENIPEKWTPEVKHFCP
          EN.I.DIEV.GK...LA.WDT.GQE..D.LR.LSYPDT.VIL.C....S...SLEN.P...T.E.K.FCP
Retrocopy ENNIDDIEVKGKYMGLAIWDTVGQEGQDHLRTLSYPDTSVILRCSFVNSFG<SLENLPGQRTLESKRFCP

Parental  NVPIILVGNKKDLRQDEHTRRELAKMKQEPVR
          NV..ILVGNK..L..D.H.R..L.KMKQE.V.
Retrocopy NVYSILVGNKMHLLKDGHIRQDLTKMKQELVK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.05 RPM	44.02 RPM
SRP007412_cerebellum	0.08 RPM	36.80 RPM
SRP007412_heart	0.00 RPM	115.76 RPM
SRP007412_kidney	0.00 RPM	176.35 RPM
SRP007412_liver	0.00 RPM	65.81 RPM
SRP007412_testis	0.00 RPM	55.43 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_732 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_732 has 2 orthologous retrocopies within eutheria group .

Species	RetrogeneDB ID
Pan troglodytes	retro_ptro_625
Equus caballus	retro_ecab_932

---

Parental genes homology:

Parental genes homology involve 15 parental genes, and 21 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000014299	1 retrocopy	retro_btau_1171,
Canis familiaris	ENSCAFG00000013413	1 retrocopy	retro_cfam_1152,
Callithrix jacchus	ENSCJAG00000013657	2 retrocopies	retro_cjac_1657, retro_cjac_2027,
Equus caballus	ENSECAG00000010174	3 retrocopies	retro_ecab_112, retro_ecab_257, retro_ecab_932,
Ficedula albicollis	ENSFALG00000000736	1 retrocopy	retro_falb_11,
Gorilla gorilla	ENSGGOG00000002741	2 retrocopies	retro_ggor_18, retro_ggor_732 ,
Gorilla gorilla	ENSGGOG00000012843	1 retrocopy	retro_ggor_2450,
Macropus eugenii	ENSMEUG00000004807	1 retrocopy	retro_meug_37,
Monodelphis domestica	ENSMODG00000000981	1 retrocopy	retro_mdom_1245,
Otolemur garnettii	ENSOGAG00000027678	3 retrocopies	retro_ogar_2606, retro_ogar_3360, retro_ogar_58,
Sarcophilus harrisii	ENSSHAG00000001981	1 retrocopy	retro_shar_455,
Taeniopygia guttata	ENSTGUG00000017533	1 retrocopy	retro_tgut_11,
Tetraodon nigroviridis	ENSTNIG00000015041	1 retrocopy	retro_tnig_2,
Xenopus tropicalis	ENSXETG00000006898	1 retrocopy	retro_xtro_15,
Xiphophorus maculatus	ENSXMAG00000008103	1 retrocopy	retro_xmac_13,