RetrogeneDB ID: | retro_hsap_575 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 10:53079636..53080417(+) | ||
Located in intron of: | ENSG00000185532 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000213659 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RSU1 | ||
Ensembl ID: | ENSG00000148484 | ||
Aliases: | RSU1, RSP-1 | ||
Description: | Ras suppressor protein 1 [Source:HGNC Symbol;Acc:10464] |
Percent Identity: | 71.97 % |
Parental protein coverage: | 94.22 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | QPEVDMSDRGISNMLDVNGLFTLSHITQLVLSHNKLTMVPPNIAELKNLEVLNFFNNQIEELPTQISSLQ |
.P.....D..I.NML.VNG.F.LSH..QLVLSHNKLT.VPPN.AELKNLEVLNF.N.QIEELPTQI.SLQ | |
Retrocopy | EPGSGQGD*VIYNMLYVNGTFSLSHTIQLVLSHNKLTVVPPNTAELKNLEVLNFLNSQIEELPTQIGSLQ |
Parental | KLKHLNLGMNRLNTLPRGFGSLP-ALEVLDLTYNNLSENSLPGNFFYLTTLRAL-YLSDNDFEILPPDIG |
KLKH.NLGMN.LNTLP.GF..LP.AL..LDL.YN.L.ENSLPGNF.YLTT.RAL.Y.SDNDF.IL.PDI. | |
Retrocopy | KLKHMNLGMNGLNTLPEGFCFLP>ALDLLDLMYN-LNENSLPGNFIYLTTFRAL>YVSDNDFKILQPDIR |
Parental | KLTKLQILSLRDNDLISLPKEIGELTQLKELHIQGNRLTVLPPELGNLDLTGQKQVFKAENNPWVTPIAD |
KLTKLQI.S.RDN.LI..P.E.GE.TQLKEL.IQGN.LT.L.PELGNL.LTGQK.V.K.EN.PWVTPIA. | |
Retrocopy | KLTKLQIPSFRDNNLILQPRETGEFTQLKELNIQGNCLTLLLPELGNLYLTGQKKVCKVENSPWVTPIAG |
Parental | QFQLGVSHVFEYIRSETYKYLYG-RHMQANPEPPKKNNDKSKKISRKPLAAKNR |
QFQL.VS.V.E...SETY.YLYG..HMQANPEPPK.NN.KS.K.S.K.L...N. | |
Retrocopy | QFQLDVSCVSECVCSETYEYLYG<QHMQANPEPPKHNNHKSEKMSWKHLTDSNK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 118 .39 RPM |
bodymap2_adrenal | 0 .00 RPM | 112 .05 RPM |
bodymap2_brain | 0 .00 RPM | 22 .95 RPM |
bodymap2_breast | 0 .00 RPM | 86 .21 RPM |
bodymap2_colon | 0 .00 RPM | 120 .42 RPM |
bodymap2_heart | 0 .09 RPM | 44 .03 RPM |
bodymap2_kidney | 0 .00 RPM | 70 .85 RPM |
bodymap2_liver | 0 .00 RPM | 31 .45 RPM |
bodymap2_lung | 0 .00 RPM | 82 .89 RPM |
bodymap2_lymph_node | 0 .00 RPM | 97 .86 RPM |
bodymap2_ovary | 0 .00 RPM | 93 .09 RPM |
bodymap2_prostate | 0 .00 RPM | 132 .48 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 33 .28 RPM |
bodymap2_testis | 0 .00 RPM | 76 .64 RPM |
bodymap2_thyroid | 0 .00 RPM | 46 .06 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 98 .91 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_425 |
Gorilla gorilla | retro_ggor_512 |
Pongo abelii | retro_pabe_611 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000148484 | 1 retrocopy |
retro_hsap_575 ,
|
Homo sapiens | ENSG00000180979 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000028048 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006702 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016067 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000009942 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012444 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002120 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000002325 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000002386 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .02 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .05 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |