RetrogeneDB ID: | retro_mmul_712 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1099214739355:26637..27355(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000029610 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RSU1 | ||
Ensembl ID: | ENSMMUG00000016067 | ||
Aliases: | None | ||
Description: | Ras suppressor protein 1 [Source:HGNC Symbol;Acc:10464] |
Percent Identity: | 72.84 % |
Parental protein coverage: | 98.77 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | TLSHITQLVLSHNKLTTVPPNIAELKNLEVLNFFNNQIEELPTQISSLQKLKHLNLGMNRLNTLP-RGFG |
.LSH..QLVLSHN.L..VP.N.AELKNLEVLNF.N.QIEELPTQISSLQKLKH.NLGMN.LNTLP...F. | |
Retrocopy | SLSHTIQLVLSHNMLAVVPLNTAELKNLEVLNFLNSQIEELPTQISSLQKLKHMNLGMNGLNTLP>KDFA |
Parental | SLPALEVLDLTYNNLSENSLPGNFFYLTTLRALY-LSDNDFEILPPDIGKLTKLQILSLRDNDLISLPKE |
..PAL..L.L.Y..L.ENSLPGNF.YLTT..AL...SDNDFEIL.PDI.KLTKLQI.S.RDN.LI..P.E | |
Retrocopy | FYPALDLLNLMYT-LNENSLPGNFIYLTTFCALF>VSDNDFEILQPDIRKLTKLQIPSFRDNNLILQPRE |
Parental | IGELTQLKELHIQGNRLTVLPPELGNLDLTGQKQVFKAENNPWVTPIADQFQLGVSHVFEYIRSETYKYL |
.GELTQLKELHI.GN.LT..PPELGNL.LTGQK.VFK.EN.PWVTP.A.QFQLGVS.VFE..RSETY.Y. | |
Retrocopy | TGELTQLKELHIRGNCLTLPPPELGNLYLTGQKKVFKVENSPWVTPVAGQFQLGVSCVFECVRSETYEYF |
Parental | YG-RHMQANPEPPKKNNDKSKKISRKPLAAKNR |
.G..HMQANPE.PKKNN.KSKKIS.K.L...N. | |
Retrocopy | HG<QHMQANPEQPKKNNHKSKKISWKHLTVSNK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 13 .56 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 11 .66 RPM |
SRP007412_cerebellum | 0 .00 RPM | 7 .43 RPM |
SRP007412_heart | 0 .06 RPM | 21 .14 RPM |
SRP007412_kidney | 0 .00 RPM | 19 .01 RPM |
SRP007412_liver | 0 .00 RPM | 10 .85 RPM |
SRP007412_testis | 0 .08 RPM | 9 .35 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000148484 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000028048 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006702 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000001544 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016067 | 1 retrocopy |
retro_mmul_712 ,
|
Monodelphis domestica | ENSMODG00000009942 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012444 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002120 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000002325 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000002386 | 1 retrocopy |