RetrogeneDB ID:

retro_meug_2092

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold89556:1372..1792(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RSU1
Ensembl ID:ENSMEUG00000006702
Aliases:None
Description:Ras suppressor protein 1 [Source:HGNC Symbol;Acc:10464]


Retrocopy-Parental alignment summary:






>retro_meug_2092
AGGCTGAATACTTTGCCCAGAGGATTTGGCTCATTACCTGTCCTGGAGGTCCTTGACTTGACTTATAACAACTTGAATGA
AAATTCTCTCCCCGGAAACTTCTTCTACCTTACCACCCTACAGGCACTTTATATCAGTGACAACAATTTTGAAATCCTGT
CGCCAGATGTTGGGAAGCTCACAAAGTTGCAGATACTCAGCCTTAGGGATAATGACCTGATTTCACTGCCAAAAGAAATT
GGGGAACTTACACAGCTGAAGGCACTACATATCCAGGGGAACTGCCTGACTGTCCTGCCCCCTGAACGCAGAAACTTGGA
TTTAACTGGTCAGAAGCAGGTCTTCAAAGCAGAGAATAATCCTTGTGTTACCCCAACTGCTGACCAGTTCCAACTCGGAG
TGTCCCATGTCTTTGAACAT

ORF - retro_meug_2092 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 90.71 %
Parental protein coverage: 51.09 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalRLNTLPRGFGSLPALEVLDLTYNNLNENSLPGNFFYLTTLRALYLSDNDFEILPPDIGKLTKLQILSLRD
RLNTLPRGFGSLP.LEVLDLTYNNLNENSLPGNFFYLTTL.ALY.SDN.FEIL.PD.GKLTKLQILSLRD
RetrocopyRLNTLPRGFGSLPVLEVLDLTYNNLNENSLPGNFFYLTTLQALYISDNNFEILSPDVGKLTKLQILSLRD
ParentalNDLISLPKEIGELTQLKELHIQGNRLTVLPPELGNLDLTGQKQVFKAENNPWVTPIADQFQLGVSHVFEY
NDLISLPKEIGELTQLK.LHIQGN.LTVLPPE..NLDLTGQKQVFKAENNP.VTP.ADQFQLGVSHVFE.
RetrocopyNDLISLPKEIGELTQLKALHIQGNCLTVLPPERRNLDLTGQKQVFKAENNPCVTPTADQFQLGVSHVFEH

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_2092 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_2092 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 9 parental genes, and 9 retrocopies.

Species Parental gene accession Retrocopies number
Homo sapiens ENSG000001484841 retrocopy
Gorilla gorilla ENSGGOG000000280481 retrocopy
Macropus eugenii ENSMEUG00000006702 1 retrocopy
retro_meug_2092 ,
Macaca mulatta ENSMMUG000000160671 retrocopy
Monodelphis domestica ENSMODG000000099421 retrocopy
Nomascus leucogenys ENSNLEG000000124441 retrocopy
Pongo abelii ENSPPYG000000021201 retrocopy
Pan troglodytes ENSPTRG000000023251 retrocopy
Tarsius syrichta ENSTSYG000000023861 retrocopy



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