RetrogeneDB ID: retro_tsyr_730

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_18397:8939..9348(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RSU1
• Ensembl ID: ENSTSYG00000002386
• Aliases: None
• Description: Ras suppressor protein 1 [Source:HGNC Symbol;Acc:10464]

Sequence

>retro_tsyr_730
CTAAGTAACAACAGTTTTGAAATCCTACCACTAGATATTGGGAAGCTCACAAAGTTGCAGACACTGAGTCTTGGGAATGA
TGGCATGATCTCACTGCCTAAGGAAATCGTGGTGCTTACCCAGCTCAAGGAACTCTACACTCAAGGGAACCACTTGATCA
TTCTGTCCCCAGAACTAGGAAACTTGAATTTAACTTACCAGAACCGGGTATTCAAGGAAGCAAACAATCTCTGGGTTATC
CCAATGCTGATCAGTTTCCGCTCAGCATCTCTTTTGTTTTTTAATATATCTATTCTGAGTCATACAAGTACCTCTACACA
GAAACATGAAGGTAAATGTGGAACCACCAAAGAAGAACAATGACAAATAGAGAAAGATCAGCAGGAAACCCCTGACAACC
AAGAACAAA

Alignment

ORF - retro_tsyr_730 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.06 %
• Parental protein coverage: 57.08 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  LSDNDFEILPPDIGKLTKLQILSLRDNDLISLPKEIGELTQLKELHIQGNRLTVLPPELGNLDLTGQKQV
          LS.N.FEILP.DIGKLTKLQ.LSL.....ISLPKEI..LTQLKEL..QGN.L..L.PELGNL.LT.Q..V
Retrocopy LSNNSFEILPLDIGKLTKLQTLSLGNDGMISLPKEIVVLTQLKELYTQGNHLIILSPELGNLNLTYQNRV

Parental  FKAENNPWVTPI-ADQFQLGVSHVFEYIRSETYKYLY-GRHMQANPEPPKKNNDKSKKISRKPLTAKNK
          FK..NN.WV.P..ADQF.L..S.VF.YI.SE.YKYLY..R.M..N.EPPKKNNDK..KISRKPLT.KNK
Retrocopy FKEANNLWVIPM<ADQFPLSISFVF*YIYSESYKYLY<HRNMKVNVEPPKKNNDK*RKISRKPLTTKNK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_730 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000148484	1 retrocopy	retro_hsap_575,
Gorilla gorilla	ENSGGOG00000028048	1 retrocopy	retro_ggor_512,
Macropus eugenii	ENSMEUG00000006702	1 retrocopy	retro_meug_2092,
Macaca mulatta	ENSMMUG00000016067	1 retrocopy	retro_mmul_712,
Monodelphis domestica	ENSMODG00000009942	1 retrocopy	retro_mdom_338,
Nomascus leucogenys	ENSNLEG00000012444	1 retrocopy	retro_nleu_462,
Pongo abelii	ENSPPYG00000002120	1 retrocopy	retro_pabe_611,
Pan troglodytes	ENSPTRG00000002325	1 retrocopy	retro_ptro_425,
Tarsius syrichta	ENSTSYG00000002386	1 retrocopy	retro_tsyr_730 ,