RetrogeneDB ID: | retro_itri_1833 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393963.1:129451..129862(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | STMN1 | ||
Ensembl ID: | ENSSTOG00000021708 | ||
Aliases: | None | ||
Description: | stathmin 1 [Source:HGNC Symbol;Acc:6510] |
Percent Identity: | 89.78 % |
Parental protein coverage: | 91.95 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | KRASGQAFELILSPRSKESVPDFPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEV |
K..SGQAFELILSP.SKESVPDFPLSPPKKKDLSLEEIQKKLEAAEERRKSHE.EVLKQLAEK.EHEKEV | |
Retrocopy | KNCSGQAFELILSPWSKESVPDFPLSPPKKKDLSLEEIQKKLEAAEERRKSHEVEVLKQLAEKQEHEKEV |
Parental | IQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKLERLREKDKHIEEVRKNKESKDPADETEAD |
.QKAIEENNNFSKMAEEKLTHKMEANKEN...QMAAKLE.L.EKDKHIEEV.KNKESKD.ADETE.D | |
Retrocopy | LQKAIEENNNFSKMAEEKLTHKMEANKEN*KVQMAAKLEHLQEKDKHIEEVQKNKESKDRADETESD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000013761 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000009462 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000011075 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000006089 | 1 retrocopy | |
Mus musculus | ENSMUSG00000028832 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006493 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000021708 | 5 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000025094 | 2 retrocopies |