Parental gene:

STMN1, ENSCJAG00000009462

Aliases:None
Description:stathmin 1 [Source:HGNC Symbol;Acc:6510]
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:59914940..59936894(-)


>ENSCJAG00000009462
ATGGCTTCTTCTGATATCCAGGTGAAAGAACTGGAGAAGCGTGCCTCAGGCCAGGCTTTTGAGCTGATTCTCAGCCCTCG
GTCAAAGGAATCTGTTCCGGAATTCCCCCTTTCCCCTCCAAAAAAGAAGGATCTTTCCCTGGAGGAAATTCAGAAGAAAT
TAGAAGCTGCAGAAGAAAGACGCAAGTCCCATGAAGCTGAGGTCTTGAAGCAGCTTGCTGAGAAACGAGAGCATGAGAAA
GAAGTGCTTCAGAAGGCAATAGAAGAGAACAACAACTTCAGTAAAATGGCAGAAGAGAAACTGACCCACAAAATGGAAGC
TAACAAAGAGAACCGAGAGGCACAAATGGCTGCCAAACTGGAGCGTTTGCGAGAGAAGATTTACTTCTGGACTCATGGGC
CTGGGTCCCAGATTTCTGCTGAGCAATCTTGTCTCCACTCTGTTCCTGACCTTTGCCTAGCCCTGGGCCTCCAGTCTGCC
TTGATTACCTCGTCTGACCTATCTCACAATCACTAG

Library Parental gene expression (RPM)
SRP051959_spleen 6 .49 RPM
SRP051959_skeletal_muscle 3 .84 RPM
SRP051959_lymph_node 10 .21 RPM
SRP051959_lung 8 .04 RPM
SRP051959_liver 1 .75 RPM
SRP051959_kidney 10 .45 RPM
SRP051959_heart 5 .44 RPM
SRP051959_colon 14 .24 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000013761 possible_ortholog 1 retrogene
retro_btau_247,
Cavia porcellus ENSCPOG00000011075 possible_ortholog 1 retrogene
retro_cpor_1505,
Equus caballus ENSECAG00000021662 possible_ortholog 1 retrogene
retro_ecab_490,
Loxodonta africana ENSLAFG00000006089 possible_ortholog 1 retrogene
retro_lafr_84,
Mustela putorius furo ENSMPUG00000015774 possible_ortholog 1 retrogene
retro_mputfur_1191,
Mus musculus ENSMUSG00000028832 possible_ortholog 3 retrogenes
retro_mmus_1660, retro_mmus_2470, retro_mmus_3383,
Oryctolagus cuniculus ENSOCUG00000006493 possible_ortholog 1 retrogene
retro_ocun_56,
Pteropus vampyrus ENSPVAG00000006344 ortholog_one2many 1 retrogene
retro_pvam_53,
Rattus norvegicus ENSRNOG00000016810 ortholog_one2many 4 retrogenes
retro_rnor_1604, retro_rnor_1855, retro_rnor_2048, retro_rnor_765,
Sorex araneus ENSSARG00000011057 possible_ortholog 2 retrogenes
retro_sara_271, retro_sara_764,
Sarcophilus harrisii ENSSHAG00000006382 possible_ortholog 1 retrogene
retro_shar_391,
Ictidomys tridecemlineatus ENSSTOG00000021708 possible_ortholog 5 retrogenes
retro_itri_1806, retro_itri_1833, retro_itri_554, retro_itri_819, retro_itri_826,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_474 87.76 98.66
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2. retro_cjac_3206 64.24 100.00
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Download FASTA sequences of all ENSCJAG00000009462 retrocopies