RetrogeneDB ID: | retro_itri_883 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393338.1:4228049..4228473(+) | ||
Located in intron of: | ENSSTOG00000006213 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000019768 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.86 % |
Parental protein coverage: | 79.01 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHY |
.FGKKEM.ILMVGLDAAGKT.I.YKLKL.EIVTT.PTIGFNV..VEY.N.SFTVWDVGGQDKIRPLW.HY | |
Retrocopy | VFGKKEM*ILMVGLDAAGKTIIFYKLKLEEIVTTLPTIGFNVKIVEYGNNSFTVWDVGGQDKIRPLWQHY |
Parental | FQNTQGLIFVV-DSNDRERVNEAREELTRML-AEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLR |
F.NTQGLIFVV...NDRERV.E....LTRML..EDE.RD..LLVFVNKQ.LP.A.N.A.I..KLGLHSL. | |
Retrocopy | FKNTQGLIFVV<FGNDRERVSETKKKLTRML<SEDEFRDS-LLVFVNKQNLPSAVNIAVIIVKLGLHSLH |
Parental | QRNWY |
QRN.. | |
Retrocopy | QRNTF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004184 | 1 retrocopy | |
Bos taurus | ENSBTAG00000006785 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000007011 | 1 retrocopy | |
Equus caballus | ENSECAG00000009563 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000019009 | 1 retrocopy | |
Mus musculus | ENSMUSG00000062421 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000023198 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002503 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000004295 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000009288 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000013990 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000019470 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000019768 | 1 retrocopy |
retro_itri_883 ,
|
Tetraodon nigroviridis | ENSTNIG00000011685 | 1 retrocopy |