Parental gene:

ENSLACG00000019009

Aliases:None
Description:None
Organism:Coelacanth (Latimeria chalumnae)
Coordinates:JH126563.1:6362284..6368050(-)


>ENSLACG00000019009
ATGGGAAGCCTGTTCGCAAAGCTCTTTAGTGCTTTTGTTGGGAAGAAGGAGATGCGGATTTTGATGGTGGGTCTGGATGC
TGCTGGGAAAACAACAATCCTTTACAAACTGAAACTTGGAGAGATCGTTACCACTATTCCTACTATAGGGTTCAATGTAG
AAACTGTTGAATACGAAAACATCAGCTTTACTGTGTGGGATGTCGGTGGTCAGGATAAAATCCGCCCTCTTTGGAGACAT
TACTTCCAAAACACACAAGGTTTGATATTCGTCGTTGACAGCAATGATCGGGAGCGGGTCACTGAAGCGAGGGAGGAGCT
GGCGAAAATGCTCTCTGAAGATGAGCTGCGTGATGCCACTCTGCTCGTCTTTGCAAACAAGCAGGATCTCCCGAATGCCA
TGAACCCACCCGAACTCACAGACAAGCTTGGCCTGCATGCTCTACACCATCACTCTTGGTACATCCAGGCTACCTGCGCC
ACCAGTGGCGACGGCCTCTATGAGGGTCTGGACTGGCTCTCCAAACAGCTGAAGAACAAGAACTGA

Library Parental gene expression (RPM)
DRP000627_pectoral_fin 29 .42 RPM
DRP000627_kidney 6 .15 RPM
DRP000627_pelvic_fin 36 .67 RPM
DRP000627_pharynx 4 .04 RPM
DRP000627_gill 9 .59 RPM
DRP000627_tail_muscle 3 .48 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000008240 possible_ortholog 1 retrogene
retro_acar_12,
Ailuropoda melanoleuca ENSAMEG00000004184 possible_ortholog 1 retrogene
retro_amel_1639,
Ailuropoda melanoleuca ENSAMEG00000007042 possible_ortholog 2 retrogenes
retro_amel_28, retro_amel_70,
Anas platyrhynchos ENSAPLG00000004509 possible_ortholog 1 retrogene
retro_apla_4,
Bos taurus ENSBTAG00000006785 possible_ortholog 1 retrogene
retro_btau_26,
Bos taurus ENSBTAG00000007725 possible_ortholog 2 retrogenes
retro_btau_1257, retro_btau_1390,
Canis familiaris ENSCAFG00000008767 possible_ortholog 1 retrogene
retro_cfam_119,
Callithrix jacchus ENSCJAG00000016671 possible_ortholog 10 retrogenes
retro_cjac_1295, retro_cjac_1691, retro_cjac_1719, retro_cjac_2189, retro_cjac_2896, retro_cjac_300, retro_cjac_3181, retro_cjac_3311, retro_cjac_3335, retro_cjac_390,
Cavia porcellus ENSCPOG00000021174 possible_ortholog 1 retrogene
retro_cpor_1310,
Cavia porcellus ENSCPOG00000025074 possible_ortholog 1 retrogene
retro_cpor_92,
Ciona savignyi ENSCSAVG00000007011 possible_ortholog 1 retrogene
retro_csav_2,
Dasypus novemcinctus ENSDNOG00000010454 possible_ortholog 3 retrogenes
retro_dnov_2375, retro_dnov_2459, retro_dnov_26,
Dipodomys ordii ENSDORG00000007603 possible_ortholog 4 retrogenes
retro_dord_31, retro_dord_351, retro_dord_409, retro_dord_573,
Equus caballus ENSECAG00000009563 possible_ortholog 1 retrogene
retro_ecab_106,
Erinaceus europaeus ENSEEUG00000004638 possible_ortholog 4 retrogenes
retro_eeur_328, retro_eeur_660, retro_eeur_684, retro_eeur_76,
Ficedula albicollis ENSFALG00000001088 possible_ortholog 1 retrogene
retro_falb_2,
Felis catus ENSFCAG00000000088 possible_ortholog 2 retrogenes
retro_fcat_2, retro_fcat_59,
Felis catus ENSFCAG00000029374 possible_ortholog 1 retrogene
retro_fcat_1829,
Homo sapiens ENSG00000134287 possible_ortholog 1 retrogene
retro_hsap_36,
Homo sapiens ENSG00000143761 possible_ortholog 3 retrogenes
retro_hsap_1008, retro_hsap_1160, retro_hsap_3763,
Gallus gallus ENSGALG00000005393 possible_ortholog 1 retrogene
retro_ggal_7,
Gorilla gorilla ENSGGOG00000011263 possible_ortholog 5 retrogenes
retro_ggor_161, retro_ggor_2531, retro_ggor_3071, retro_ggor_801, retro_ggor_906,
Loxodonta africana ENSLAFG00000004207 possible_ortholog 1 retrogene
retro_lafr_115,
Macropus eugenii ENSMEUG00000005072 possible_ortholog 7 retrogenes
retro_meug_1036, retro_meug_1117, retro_meug_1857, retro_meug_29, retro_meug_395, retro_meug_616, retro_meug_946,
Microcebus murinus ENSMICG00000017545 possible_ortholog 1 retrogene
retro_mmur_37,
Myotis lucifugus ENSMLUG00000007020 possible_ortholog 6 retrogenes
retro_mluc_1631, retro_mluc_242, retro_mluc_2605, retro_mluc_428, retro_mluc_511, retro_mluc_876,
Myotis lucifugus ENSMLUG00000029846 possible_ortholog 1 retrogene
retro_mluc_119,
Macaca mulatta ENSMMUG00000002792 possible_ortholog 3 retrogenes
retro_mmul_237, retro_mmul_541, retro_mmul_810,
Macaca mulatta ENSMMUG00000006968 possible_ortholog 1 retrogene
retro_mmul_174,
Monodelphis domestica ENSMODG00000013804 possible_ortholog 1 retrogene
retro_mdom_241,
Mustela putorius furo ENSMPUG00000014730 possible_ortholog 1 retrogene
retro_mputfur_86,
Mus musculus ENSMUSG00000048076 possible_ortholog 1 retrogene
retro_mmus_1718,
Mus musculus ENSMUSG00000051853 possible_ortholog 1 retrogene
retro_mmus_147,
Mus musculus ENSMUSG00000062421 possible_ortholog 1 retrogene
retro_mmus_2056,
Nomascus leucogenys ENSNLEG00000014137 possible_ortholog 3 retrogenes
retro_nleu_210, retro_nleu_227, retro_nleu_2929,
Nomascus leucogenys ENSNLEG00000017859 possible_ortholog 2 retrogenes
retro_nleu_1348, retro_nleu_94,
Oryctolagus cuniculus ENSOCUG00000023198 possible_ortholog 1 retrogene
retro_ocun_132,
Oryctolagus cuniculus ENSOCUG00000023645 possible_ortholog 2 retrogenes
retro_ocun_1137, retro_ocun_247,
Otolemur garnettii ENSOGAG00000002503 possible_ortholog 1 retrogene
retro_ogar_263,
Otolemur garnettii ENSOGAG00000010974 possible_ortholog 4 retrogenes
retro_ogar_2431, retro_ogar_295, retro_ogar_3353, retro_ogar_974,
Ochotona princeps ENSOPRG00000007411 possible_ortholog 2 retrogenes
retro_opri_13, retro_opri_3,
Ochotona princeps ENSOPRG00000015063 possible_ortholog 2 retrogenes
retro_opri_317, retro_opri_759,
Procavia capensis ENSPCAG00000014202 possible_ortholog 2 retrogenes
retro_pcap_15, retro_pcap_23,
Petromyzon marinus ENSPMAG00000000531 possible_ortholog 1 retrogene
retro_pmar_5,
Pongo abelii ENSPPYG00000000148 possible_ortholog 3 retrogenes
retro_pabe_3159, retro_pabe_849, retro_pabe_965,
Pongo abelii ENSPPYG00000004473 possible_ortholog 1 retrogene
retro_pabe_126,
Pelodiscus sinensis ENSPSIG00000009767 possible_ortholog 1 retrogene
retro_psin_12,
Pan troglodytes ENSPTRG00000002066 possible_ortholog 2 retrogenes
retro_ptro_112, retro_ptro_5,
Pteropus vampyrus ENSPVAG00000004626 possible_ortholog 1 retrogene
retro_pvam_7,
Pteropus vampyrus ENSPVAG00000007383 possible_ortholog 1 retrogene
retro_pvam_1324,
Rattus norvegicus ENSRNOG00000030591 possible_ortholog 3 retrogenes
retro_rnor_1268, retro_rnor_1348, retro_rnor_1950,
Rattus norvegicus ENSRNOG00000033155 possible_ortholog 1 retrogene
retro_rnor_272,
Rattus norvegicus ENSRNOG00000048089 possible_ortholog 1 retrogene
retro_rnor_2521,
Sarcophilus harrisii ENSSHAG00000003635 possible_ortholog 2 retrogenes
retro_shar_25, retro_shar_364,
Sarcophilus harrisii ENSSHAG00000014599 possible_ortholog 3 retrogenes
retro_shar_106, retro_shar_462, retro_shar_725,
Sus scrofa ENSSSCG00000013992 possible_ortholog 2 retrogenes
retro_sscr_429, retro_sscr_82,
Ictidomys tridecemlineatus ENSSTOG00000004295 possible_ortholog 1 retrogene
retro_itri_175,
Ictidomys tridecemlineatus ENSSTOG00000009288 possible_ortholog 3 retrogenes
retro_itri_1754, retro_itri_273, retro_itri_363,
Ictidomys tridecemlineatus ENSSTOG00000019768 possible_ortholog 1 retrogene
retro_itri_883,
Tupaia belangeri ENSTBEG00000009218 possible_ortholog 9 retrogenes
retro_tbel_1943, retro_tbel_2224, retro_tbel_2310, retro_tbel_2358, retro_tbel_2662, retro_tbel_2770, retro_tbel_3103, retro_tbel_4217, retro_tbel_4624,
Taeniopygia guttata ENSTGUG00000000233 possible_ortholog 1 retrogene
retro_tgut_2,
Tetraodon nigroviridis ENSTNIG00000011685 possible_ortholog 1 retrogene
retro_tnig_19,
Tursiops truncatus ENSTTRG00000004698 possible_ortholog 1 retrogene
retro_ttru_1081,
Tursiops truncatus ENSTTRG00000014186 possible_ortholog 2 retrogenes
retro_ttru_1679, retro_ttru_347,
Vicugna pacos ENSVPAG00000003224 possible_ortholog 4 retrogenes
retro_vpac_281, retro_vpac_328, retro_vpac_6, retro_vpac_78,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lcha_10 56.35 98.34
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Download FASTA sequences of all ENSLACG00000019009 retrocopies