RetrogeneDB ID: | retro_mdom_258 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 4:266233211..266234270(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMODG00000024309 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMODG00000017334 | ||
Aliases: | None | ||
Description: | Ribose-phosphate pyrophosphokinase [Source:UniProtKB/TrEMBL;Acc:F6WVR9] |
Percent Identity: | 93.71 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPNIVLFSGSSHQDLSQKVADRLGLELGKVVTKKFSNQETSVEIGESVRGEDVYIIQSGCGEINDNLMEL |
MPNI.LFSG.SHQDLSQKVADRLGL.LGKVV..KFSNQETSVEIGESVRGEDVYIIQSGCGEINDNLMEL | |
Retrocopy | MPNILLFSGNSHQDLSQKVADRLGLKLGKVVSTKFSNQETSVEIGESVRGEDVYIIQSGCGEINDNLMEL |
Parental | LIMINACKIASSSRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDI |
L.MINACKIASSSRVTAVIPCFPYARQDKKDKSR.PISAKLVANMLSVAGADHIITMDLHASQIQGFFDI | |
Retrocopy | LLMINACKIASSSRVTAVIPCFPYARQDKKDKSRVPISAKLVANMLSVAGADHIITMDLHASQIQGFFDI |
Parental | PVDNLYAEPAVLQWIRENIAEWRNCIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVDRMVLVGD |
PVDN.YAEPA.LQWI..NI.EWRNCIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVDRMVLVGD | |
Retrocopy | PVDNMYAEPAFLQWIQKNITEWRNCIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVDRMVLVGD |
Parental | VKDRVAILVDDMADTCGTICHAADKLLSAGATKVYAILTHGIFSGPAISRINNAAFEAVVVTNTIPQEDK |
VK.RVAILVDD.ADTCGTICHAADKLLSAGATK.YAI.THGIFSGPAISRINNAAFEAVVVTNTIPQEDK | |
Retrocopy | VKNRVAILVDDIADTCGTICHAADKLLSAGATKIYAIVTHGIFSGPAISRINNAAFEAVVVTNTIPQEDK |
Parental | MKHCSKIQVIDISMILAEAIRRTHNGESVSYLFSHVPL |
M..CSKIQVIDISMILAE.IRRTHNGESVSYLFS.VPL | |
Retrocopy | MDRCSKIQVIDISMILAETIRRTHNGESVSYLFSQVPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000011662 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000003885 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000007206 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000007577 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000005166 | 2 retrocopies | |
Felis catus | ENSFCAG00000026323 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000009171 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017334 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000016087 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000001197 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000020125 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000009452 | 1 retrocopy | |
Sorex araneus | ENSSARG00000007710 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006056 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000009917 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000003226 | 1 retrocopy |