RetrogeneDB ID: | retro_mdom_1506 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 5:53140504..53140891(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H2AFZ | ||
Ensembl ID: | ENSMODG00000020686 | ||
Aliases: | None | ||
Description: | H2A histone family, member Z [Source:HGNC Symbol;Acc:4741] |
Percent Identity: | 79.07 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MAGGRAGKDSEKAKTKAFSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELA |
MAG..AGK.S.KAKTKA.S..QRAGL.F.VG.IH.HLKSRT.SHG...ATA..Y.A.ILEYLTAEVLELA | |
Retrocopy | MAGRKAGKVSRKAKTKAVSPLQRAGL*FSVGHIHWHLKSRTSSHGCTRATASMYTAVILEYLTAEVLELA |
Parental | GNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIA-GGGVIPHIHKSLIGKKGQQKTV |
GN.SKDLKVK.ITPRHLQLAI.GDEELD.LIKAT.A.GGG.IPHIHKSLI.KKGQQKTV | |
Retrocopy | GNSSKDLKVKCITPRHLQLAICGDEELDPLIKATLASGGGMIPHIHKSLI*KKGQQKTV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |