Parental gene:

H2AFZ, ENSPTRG00000016312

Aliases:None
Description:H2A histone family, member Z [Source:HGNC Symbol;Acc:4741]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:4:102429441..102431631(-)


>ENSPTRG00000016312
ATGGCTGGCGGTAAGGCTGGAAAGGACTCCGGAAAGGCCAAGACAAAGGCGGTTTCCCGCTCGCAGAGAGCCGGCTTGCA
GTTCCCAGTGGGCCGTATTCATCGACACCTGAAATCTAGGACGACCAGTCATGGACGTGTGGGTGCGACTGCCGCTGTGT
ACAGCGCAGCCATCCTGGAGTACCTCACCGCAGAGGTACTTGAACTGGCAGGAAATGCATCAAAAGACTTAAAGGTAAAG
CGTATTACCCCTCGTCACTTGCAACTTGCTATTCGTGGAGATGAAGAATTGGATTCTCTCATCAAGGCTACAATTGCTGG
TGGTGGTGTCATTCCACACATCCACAAATCTCTGATTGGGAAGAAAGGACAACAGAAGACTGTCTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 64 .42 RPM
SRP007412_cerebellum 57 .61 RPM
SRP007412_heart 18 .27 RPM
SRP007412_kidney 48 .17 RPM
SRP007412_liver 54 .70 RPM
SRP007412_testis 119 .50 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000959 ortholog_one2one 1 retrogene
retro_amel_1183,
Canis familiaris ENSCAFG00000010615 ortholog_one2many 2 retrogenes
retro_cfam_1000, retro_cfam_101,
Callithrix jacchus ENSCJAG00000015235 ortholog_one2many 1 retrogene
retro_cjac_91,
Echinops telfairi ENSETEG00000006613 ortholog_one2many 2 retrogenes
retro_etel_137, retro_etel_54,
Homo sapiens ENSG00000164032 ortholog_one2one 6 retrogenes
retro_hsap_1292, retro_hsap_2534, retro_hsap_2581, retro_hsap_4073, retro_hsap_4113, retro_hsap_598,
Gorilla gorilla ENSGGOG00000027801 ortholog_one2one 6 retrogenes
retro_ggor_1014, retro_ggor_137, retro_ggor_1616, retro_ggor_183, retro_ggor_2760, retro_ggor_720,
Loxodonta africana ENSLAFG00000028460 ortholog_one2one 2 retrogenes
retro_lafr_1255, retro_lafr_269,
Macropus eugenii ENSMEUG00000013699 ortholog_one2one 1 retrogene
retro_meug_1457,
Microcebus murinus ENSMICG00000002469 ortholog_one2one 3 retrogenes
retro_mmur_1056, retro_mmur_1159, retro_mmur_634,
Macaca mulatta ENSMMUG00000006834 ortholog_one2one 7 retrogenes
retro_mmul_1049, retro_mmul_1320, retro_mmul_1593, retro_mmul_2368, retro_mmul_2448, retro_mmul_2465, retro_mmul_645,
Monodelphis domestica ENSMODG00000020686 ortholog_one2one 2 retrogenes
retro_mdom_1506, retro_mdom_977,
Mustela putorius furo ENSMPUG00000009519 ortholog_one2one 2 retrogenes
retro_mputfur_1343, retro_mputfur_1529,
Mus musculus ENSMUSG00000037894 ortholog_one2one 6 retrogenes
retro_mmus_2397, retro_mmus_2780, retro_mmus_2976, retro_mmus_3039, retro_mmus_3585, retro_mmus_953,
Nomascus leucogenys ENSNLEG00000013662 ortholog_one2one 3 retrogenes
retro_nleu_2505, retro_nleu_2737, retro_nleu_2864,
Oryctolagus cuniculus ENSOCUG00000001888 ortholog_one2one 2 retrogenes
retro_ocun_513, retro_ocun_728,
Otolemur garnettii ENSOGAG00000003419 ortholog_one2one 8 retrogenes
retro_ogar_2276, retro_ogar_2377, retro_ogar_2722, retro_ogar_3255, retro_ogar_3396, retro_ogar_755, retro_ogar_866, retro_ogar_885,
Ochotona princeps ENSOPRG00000012582 ortholog_one2one 1 retrogene
retro_opri_404,
Pongo abelii ENSPPYG00000014957 ortholog_one2one 7 retrogenes
retro_pabe_1070, retro_pabe_1901, retro_pabe_2374, retro_pabe_3343, retro_pabe_3367, retro_pabe_592, retro_pabe_668,
Pan troglodytes ENSPTRG00000019153 within_species_paralog 1 retrogene
retro_ptro_1081,
Rattus norvegicus ENSRNOG00000010306 ortholog_one2many 9 retrogenes
retro_rnor_1136, retro_rnor_1202, retro_rnor_1605, retro_rnor_1933, retro_rnor_2155, retro_rnor_2413, retro_rnor_2494, retro_rnor_2908, retro_rnor_788,
Ictidomys tridecemlineatus ENSSTOG00000023194 ortholog_one2one 1 retrogene
retro_itri_1524,
Tupaia belangeri ENSTBEG00000000478 ortholog_one2many 15 retrogenes
retro_tbel_1289, retro_tbel_1290, retro_tbel_1320, retro_tbel_1925, retro_tbel_1959, retro_tbel_1972, retro_tbel_2304, retro_tbel_2526, retro_tbel_2685, retro_tbel_3575, retro_tbel_4077, retro_tbel_4308, retro_tbel_4369, retro_tbel_4451, retro_tbel_819,
Tarsius syrichta ENSTSYG00000009462 possible_ortholog 2 retrogenes
retro_tsyr_1715, retro_tsyr_971,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_441 78.12 100.00
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2. retro_ptro_614 80.70 89.06
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3. retro_ptro_884 83.21 100.00
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4. retro_ptro_1477 74.68 60.94
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5. retro_ptro_1508 69.70 75.00
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6. retro_ptro_2760 92.97 100.00
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7. retro_ptro_2792 63.33 91.41
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Download FASTA sequences of all ENSPTRG00000016312 retrocopies