RetrogeneDB ID: | retro_meug_1077 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold279471:823..1587(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMEUG00000014684 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.27 % |
Parental protein coverage: | 82.52 % |
Number of stop codons detected: | 9 |
Number of frameshifts detected | 1 |
Parental | GGRGRGTPRGRGRGGRGGFQGGKKVTVEPHRHEGVFICRGKEDALVTKNMV-PGESVYGEKRITVEDGEA |
GGR..G.P.G.G.G...GFQ.GKKVTVEPH.HEGVFIC.GKED.LVTK.MV..G.SVYGEKRITVED.E. | |
Retrocopy | GGRD*GIPQG*GQGSPEGFQEGKKVTVEPH*HEGVFICQGKEDSLVTKDMV<AGKSVYGEKRITVEDDEL |
Parental | KLEYRAWNPFRSKLAAAILGGVDQIHIRPGAKVLYLGAASGTTVSHVSDIVGPEGLVYAVEFSHRSGRDL |
KLEY..WN.F.SKLAA.ILG.V.QIHI.PG.KVLYLGAASGTT.SHVSDIVGPEGLV.A...SHRSG.DL | |
Retrocopy | KLEYYGWNCF*SKLAAVILGVVGQIHIQPGTKVLYLGAASGTTISHVSDIVGPEGLVFAAKVSHRSG*DL |
Parental | INVAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQSRIVALNAHNFLRNGGHFVISIKANCID |
IN.AKK.TNII...ED.RHPHKY..LI.M.D.IF...AQ.DQS.I.ALNAH.FL.NGG.FVISI..NCI. | |
Retrocopy | INGAKKKTNIIYITEDVRHPHKY*KLIVMADMIFGNAAQLDQS*IEALNAHSFLHNGGYFVISI*VNCIY |
Parental | STASPEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRPP |
.TASPE..FA.E..KMQQE.MKPQEQLTLEP.E..H.VVV..Y.PP | |
Retrocopy | ATASPETMFALEINKMQQEKMKPQEQLTLEPCE*HHTVVVRMYSPP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000002579 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000005412 | 1 retrocopy | |
Equus caballus | ENSECAG00000023221 | 1 retrocopy | |
Homo sapiens | ENSG00000105202 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000000171 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000014684 | 1 retrocopy |
retro_meug_1077 ,
|
Microcebus murinus | ENSMICG00000007686 | 1 retrocopy | |
Mus musculus | ENSMUSG00000046865 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000014234 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000006463 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000010982 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000010849 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000019229 | 4 retrocopies | |
Sorex araneus | ENSSARG00000008709 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000030510 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000012486 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000007755 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000003967 | 1 retrocopy |