RetrogeneDB ID: retro_meug_1496

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold42650:11218..11599(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MEMO1
• Ensembl ID: ENSMEUG00000010461
• Aliases: None
• Description: mediator of cell motility 1 [Source:HGNC Symbol;Acc:14014]

Sequence

>retro_meug_1496
CAGACAAGTGGATCCATCACCCAGAGAATATTCATCCATGGGCCTTCCCATCAAGTGCCCCTATCTTGATGTGTACTTTC
CAGTGTGGATATAAGTAGAACACATCTGTATGACCTTCCTATTGATCAAAGGATTTATGGAGATCTATGGAAGACAGAAA
TGTTTGAGTGCATGTCTCTGAAGACAGATGAAGATGAACACAGTACTGAAATGCTTTTGCCTTATACTGCTAAAGGCATG
GAAAGCCAGAAGGATGAGTTTACCATTATTCCTGTATTGGTTGGAGTTCTGAGTGAGTCAAAAGAGCAGGAATTTGGAAA
ACTCTTCAGTACATATATAGCGGATCCTCATAATCTCTTTGTGGTTTCCTCTGATTTCTGT

Alignment

ORF - retro_meug_1496 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.08 %
• Parental protein coverage: 51.0 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  QVDPSITRRIFILGPSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFERMSLQTDDDEXXXX
          Q...SIT.RIFI.GPSH.VPLS.C.LSSVDI.RT.LYDL.IDQ.IYG.LWKT.MFE.MSL.TD.DE....
Retrocopy QTSGSITQRIFIHGPSHQVPLS*CVLSSVDISRTHLYDLPIDQRIYGDLWKTEMFECMSLKTDEDEHSTE

Parental  XXXXXXXXXXXXHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVVSSDFC
          .............KDEFTIIPVLVG.LSESKEQEFGKLFS.Y.ADP.NLFVVSSDFC
Retrocopy MLLPYTAKGMESQKDEFTIIPVLVGVLSESKEQEFGKLFSTYIADPHNLFVVSSDFC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1496 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1496 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000010461	2 retrocopies	retro_meug_1496 , retro_meug_1697,
Mustela putorius furo	ENSMPUG00000005208	1 retrocopy	retro_mputfur_679,
Oryctolagus cuniculus	ENSOCUG00000005878	3 retrocopies	retro_ocun_1441, retro_ocun_1663, retro_ocun_928,