Parental gene:

ENSOCUG00000005878

Aliases:None
Description:None
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:2:154325422..154400607(+)


>ENSOCUG00000005878
GGACCGCAGCTGAATGCCCAGCTAGAAGGTTGGCTTTCACAAGTACAGTCTACAAAAAAGCCTGCTAGAGCCATTATTGC
ACCCCATGCAGGATATACGTACTGTGGGTCTTGTGCTGCCCATGCTTACAAACAAGTGGATCCATCTATAACCCGGAGAA
TTTTCATCCTTGGACCTTCTCATCACGTGCCCCTCTCTCGATGTGCACTTTCCAGTGTGGATATATATAGGACGCCTCTG
TATGACCTTCGTATTGACCAAAAGATTTACGGAGAACTGTGGAAGACAGGAATGTTTGAACGCATGTCTCTACAAACAGA
TGAAGATGAACACAGTATTGAAATGCACTTGCCTTATACAGCTAAAGCCATGGAAAGCCATAAGGATGAGTTTACCATTA
TTCCTGTACTGGTTGGAGCTCTGAGTGAGTCAAAAGAACAGGAATTCGGAAAACTCTTCAGTAAATATCTAGCGGATCCT
AGTAATCTCTTTGTGGTTTCTTCTGATTTCTGCCATTGGGGTCAGAGGTTCCGTTACAGTTACTATGATGAATCCCAGGG
GGAGATTTATAGATCCATTGAACATCTAGATAAAATGGGTATGAGTATTATAGAGCAATTAGACCCTGTATCTTTTAGCA
ATTACTTGAAGAAGTACCATAATACTATATGTGGAAGACATCCCATAGGGGTGTTACTAAATGCTATCACAGAGCTCCAG
AAGAATGGAATGAATATGAGCTTTTCCTTTTTGAATTATGCCCAGTCAAGCCAGTGCAGAAACTGGCAAGACAGTTCAGT
GAGTTATGCAGCTGGAGCCCTCACGGTCCAC

Library Parental gene expression (RPM)
SRP017611_brain 8 .77 RPM
SRP017611_kidney 10 .95 RPM
SRP017611_liver 4 .62 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007771 possible_ortholog 1 retrogene
retro_amel_1500,
Choloepus hoffmanni ENSCHOG00000012339 ortholog_one2many 2 retrogenes
retro_chof_2257, retro_chof_2552,
Cavia porcellus ENSCPOG00000012278 ortholog_one2many 1 retrogene
retro_cpor_1159,
Dasypus novemcinctus ENSDNOG00000001254 ortholog_one2many 1 retrogene
retro_dnov_253,
Equus caballus ENSECAG00000019946 possible_ortholog 1 retrogene
retro_ecab_401,
Echinops telfairi ENSETEG00000007994 possible_ortholog 1 retrogene
retro_etel_561,
Felis catus ENSFCAG00000001385 possible_ortholog 1 retrogene
retro_fcat_642,
Homo sapiens ENSG00000162959 possible_ortholog 2 retrogenes
retro_hsap_2507, retro_hsap_3522,
Macropus eugenii ENSMEUG00000010461 possible_ortholog 2 retrogenes
retro_meug_1496, retro_meug_1697,
Myotis lucifugus ENSMLUG00000016108 possible_ortholog 1 retrogene
retro_mluc_1923,
Mustela putorius furo ENSMPUG00000005208 possible_ortholog 1 retrogene
retro_mputfur_679,
Mus musculus ENSMUSG00000058704 possible_ortholog 1 retrogene
retro_mmus_834,
Nomascus leucogenys ENSNLEG00000015577 possible_ortholog 1 retrogene
retro_nleu_488,
Otolemur garnettii ENSOGAG00000010975 possible_ortholog 3 retrogenes
retro_ogar_1860, retro_ogar_2049, retro_ogar_3050,
Pongo abelii ENSPPYG00000012511 possible_ortholog 1 retrogene
retro_pabe_2910,
Pteropus vampyrus ENSPVAG00000011427 ortholog_one2many 1 retrogene
retro_pvam_184,
Ictidomys tridecemlineatus ENSSTOG00000002828 possible_ortholog 2 retrogenes
retro_itri_1321, retro_itri_537,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_928 70.18 76.53
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2. retro_ocun_1441 82.14 50.18
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3. retro_ocun_1663 98.76 87.36
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Download FASTA sequences of all ENSOCUG00000005878 retrocopies