RetrogeneDB ID: retro_mputfur_679

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896934.1:9401935..9402521(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MEMO1
• Ensembl ID: ENSMPUG00000005208
• Aliases: None
• Description: mediator of cell motility 1 [Source:HGNC Symbol;Acc:14014]

Sequence

>retro_mputfur_679
CAGACACCTCTATATGTCCTTTATATTGACCAAAAGATTTATGAAGAATTACGGAAGACAAGAGTGTTTGAACACATGTC
TCTGCAGAGAAATAAAGATGAGCACAGTATTGAAATGCTTTTGCCTTATACAGCTAAAGCCATGGAAAGCCATAAGGATG
AGTTTACATTATTCTTGTACTGGATGGAGCTCTGACTAAGTCAAAAGAACAGGAATTCAAAAAAACTCTTCAGTAAATAT
CTAGGGGATCCTAGTAATCTCTTTGTGGTTTCTTCTGGTTTTGGCCATTGGGGTCTAAGTTTCTATTACAGTTACTATGA
TGAACCCAGGAGAGATTTATAGATCCATTGGACATCTAGAGAAAATGGATGTGAGTATGACAGAACAACCAGATCCTGTA
TCTTTTAGCAATTACTTAAAGAAATACCATAATCCTGTATGTGGAAGACGTCCCATTGTGGTGTTATTAAATGCTATCAC
AGAGCTCCAGAAGAACAGAATCAATATGAGCCTTTCCTTTTTGAATTATGGCCAGTTAGGCCAGTGTAGGAACTGGCAAG
ACAGTACAGTGAGTTATTCAGGGGGA

Alignment

ORF - retro_mputfur_679 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 73.87 %
• Parental protein coverage: 72.86 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  RTPLYDLRIDQKIYGELWKTGMFERMSLQTDEDEHSIEMHLPYTAKAMESHKDEFT-IIPVLVGALSESK
          .TPLY.L.IDQKIY.EL.KT..FE.MSLQ...DEHSIEM.LPYTAKAMESHKDEFT.II.VL.GAL..SK
Retrocopy QTPLYVLYIDQKIYEELRKTRVFEHMSLQRNKDEHSIEMLLPYTAKAMESHKDEFT<IILVLDGALTKSK

Parental  EQEFGK-LFSKYLADPSNLFVVSSDFCHWGQRFRYSYYDE-SQGEIYRSIEHLDKMGMSIIEQLDPVSFS
          EQEF.K.LFSKYL.DPSNLFVVSS.F.HWG..F.Y..Y.....GEIYRSI.HL.KM..S..EQ.DPVSFS
Retrocopy EQEFKK>LFSKYLGDPSNLFVVSSGFGHWGLSF-YYSYYD>NPGEIYRSIGHLEKMDVSMTEQPDPVSFS

Parental  NYLKKYHNTICGRHPIGVLLNAITELQKNGMNMSFSFLNYAQSSQCRNWQDSSVSYAAG
          NYLKKYHN..CGR.PI.VLLNAITELQKN..NMS.SFLNY.Q..QCRNWQDS.VSY..G
Retrocopy NYLKKYHNPVCGRRPIVVLLNAITELQKNRINMSLSFLNYGQLGQCRNWQDSTVSYSGG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_679 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_679 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000010461	2 retrocopies	retro_meug_1496, retro_meug_1697,
Mustela putorius furo	ENSMPUG00000005208	1 retrocopy	retro_mputfur_679 ,
Oryctolagus cuniculus	ENSOCUG00000005878	3 retrocopies	retro_ocun_1441, retro_ocun_1663, retro_ocun_928,