RetrogeneDB ID: retro_meug_1697

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold53441:9483..9918(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MEMO1
• Ensembl ID: ENSMEUG00000010461
• Aliases: None
• Description: mediator of cell motility 1 [Source:HGNC Symbol;Acc:14014]

Sequence

>retro_meug_1697
CATGCAGGATATACTTACTGTGGGTCTTGTGCTGCTCATGCTTACAAACAAGTGGATCCATCTATTACCCGGAGAATATT
CATCCTTGGGCCTTCCCATCACGTGCCCCTATCTCGATGTGCACTTTCCAGTGTGGATATATATAGAACACCTCTGTATG
ACCTGCGTATTGATCAAAAAATTTATGGAGAGCTTTGGCCGACAGGAATGTTTGAGCGCATGTCTCTGCAGACAGATGAA
GATGAACACAGTATTGAAATGCATTTGCCTTATACTGCTAAAGCCATGGAAAGCCATAAGGATGAGTTTACCATTATTCC
TGTATTGGTTGGAGCTCTGAGTGAGTCAAAAGAACAGGAATTCGGAAAACTCTTCAGTAAATATCTAGCGGATCCTAGTA
ATCTCTTTGTGGTTTCTTCTGATTTCTGCCATTGG

Alignment

ORF - retro_meug_1697 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.59 %
• Parental protein coverage: 58.23 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  HAGYTYCGSCAAHAYKQVDPSITRRIFILGPSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGM
          HAGYTYCGSCAAHAYKQVDPSITRRIFILGPSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELW.TGM
Retrocopy HAGYTYCGSCAAHAYKQVDPSITRRIFILGPSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWPTGM

Parental  FERMSLQTDDDEXXXXXXXXXXXXXXXXHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVVSS
          FERMSLQTD.DE................HKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVVSS
Retrocopy FERMSLQTDEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVVSS

Parental  DFCHW
          DFCHW
Retrocopy DFCHW

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1697 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1697 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000010461	2 retrocopies	retro_meug_1496, retro_meug_1697 ,
Mustela putorius furo	ENSMPUG00000005208	1 retrocopy	retro_mputfur_679,
Oryctolagus cuniculus	ENSOCUG00000005878	3 retrocopies	retro_ocun_1441, retro_ocun_1663, retro_ocun_928,