RetrogeneDB ID:

retro_meug_1918

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold72182:12099..12685(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:YWHAQ
Ensembl ID:ENSMEUG00000014442
Aliases:None
Description:tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide [Source:HGNC Symbol;Acc:12854]


Retrocopy-Parental alignment summary:






>retro_meug_1918
ATGGATAAAAATGAGCTGGTGCAGAAGGCCAAATTGGCTGAGCAGGCTGAGAGATATGATGACATGGCAGCCTGCATGAA
GTCTGTAACTGAGCAAGGAGCTGAATTATCCAATGAGGAGAGGAATCTTCTCTCTGTTGCTTACAAAAATGTCGTAGGGG
CCCGAAGGTCATCTTGGAGGGTTGTTTCAAGTATTGAGCAAAAGACGGAAGGTGCTGAGGAAAAAAAACAGCAGATGGCC
CGAGAATACAGAGAGAAAATTGAGACCGAACTAAGAGATATCTGCAATGATGTACTGTCTCTGTTGGAAAAGTTCTTGAT
TCCTAATGCTTCACAAGCAGAAAGCAAAGTTTTCTATTTGAAAATGAAAGGAGACTACTACCGTTATTTGGCTGAAGTTG
CTGCTGGTGATGACAAGAAAGGAATAGTGGATCAATCACAACAAGCATATCAAGAAGCATTTGAAATCAGCCAAAAGGAG
ATGCAACCCACGCATCCCTATAAGAATGGGTCTGGCTTTGAACTTCTCTGTGTTCTATTATGAGATCCTGAACTCTCCCC
AAAAAGCCTGCTCCCTTGCCAAGACA

ORF - retro_meug_1918 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 69.9 %
Parental protein coverage: 79.18 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMEKTEMIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAWRVISSIEQKTD
M.K.E..QKAKLAEQAERYDDMA.CMK.VTEQGAELSNEERNLLSVAYKNVVG.RRS.WRV.SSIEQKT.
RetrocopyMDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTE
ParentalTSD-KKMQLVKDYXXXXXXXXXXXXXXXXELLDKFLIANATNPESKVFYLKMKGDYFRYLAEVACGDDRK
.......Q....Y.................LL.KFLI.NA...ESKVFYLKMKGDY.RYLAEVA.GDD.K
RetrocopyGAEXXXQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKK
ParentalQTIDNSQGAYQEAFDISKKEMQPTH-PIRLGLALNFSVFYYEILNNPELACTLAKT
...D.SQ.AYQEAF.IS.KEMQPTH.PIR.GLALNFSVFYYEILN.P..AC.LAKT
RetrocopyGIVDQSQQAYQEAFEISQKEMQPTH>PIRMGLALNFSVFYYEILNSPQKACSLAKT

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1918 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1918 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 9 parental genes, and 39 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000063942 retrocopies
Echinops telfairi ENSETEG000000153594 retrocopies
Macropus eugenii ENSMEUG00000014442 7 retrocopies
Macropus eugenii ENSMEUG0000001546012 retrocopies
Monodelphis domestica ENSMODG000000147401 retrocopy
Nomascus leucogenys ENSNLEG000000135343 retrocopies
Pongo abelii ENSPPYG000000126634 retrocopies
Pelodiscus sinensis ENSPSIG000000126921 retrocopy
Rattus norvegicus ENSRNOG000000081045 retrocopies



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